*** empty log message ***

[mothur.git] / bayesian.cpp

diff --git a/bayesian.cpp b/bayesian.cpp
index d62bb23e3e23ae1c98b3757ddd4075b4edf5a806..b1f2c4cf422656bb603f1691b67b79b57305490e 100644 (file)
--- a/bayesian.cpp
+++ b/bayesian.cpp
@@ -111,8 +111,8 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i)  {
                        //cout << numKmers << '\t' << genusNodes.size() << endl;
                                for (int j = 0; j < wordGenusProb.size(); j++) {        wordGenusProb[j].resize(genusNodes.size());             }
                        //cout << numKmers << '\t' << genusNodes.size() << endl;        
-                               ofstream out;
-                               ofstream out2;
+                               //ofstream out;
+                               //ofstream out2;
                                
                                #ifdef USE_MPI
                                        int pid;
@@ -122,17 +122,17 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i)  {
                                #endif
 
                                
-                               m->openOutputFile(probFileName, out);
+                               //m->openOutputFile(probFileName, out);
                                
                                //output mothur version
-                               out << "#" << m->getVersion() << endl;
+                               //out << "#" << m->getVersion() << endl;
                                
-                               out << numKmers << endl;
+                               //out << numKmers << endl;
                                
-                               m->openOutputFile(probFileName2, out2);
+                               //m->openOutputFile(probFileName2, out2);
                                
                                //output mothur version
-                               out2 << "#" << m->getVersion() << endl;
+                               //out2 << "#" << m->getVersion() << endl;
                                
                                #ifdef USE_MPI
                                        }
@@ -149,7 +149,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i)  {
                                                if (pid == 0) {  
                                        #endif
 
-                                       out << i << '\t';
+                                       //out << i << '\t';
                                        
                                        #ifdef USE_MPI
                                                }
@@ -184,7 +184,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i)  {
                                                                if (pid == 0) {  
                                                        #endif
 
-                                                       out << k << '\t' << wordGenusProb[i][k] << '\t'; 
+                                                       //out << k << '\t' << wordGenusProb[i][k] << '\t'; 
                                                        
                                                        #ifdef USE_MPI
                                                                }
@@ -200,8 +200,8 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i)  {
                                                if (pid == 0) {  
                                        #endif
                                        
-                                       out << endl;
-                                       out2 << probabilityInTemplate << '\t' << numNotZero << endl;
+                                       //out << endl;
+                                       //out2 << probabilityInTemplate << '\t' << numNotZero << endl;
                                        
                                        #ifdef USE_MPI
                                                }
@@ -214,8 +214,8 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i)  {
                                        if (pid == 0) {  
                                #endif
                                
-                               out.close();
-                               out2.close();
+                               //out.close();
+                               //out2.close();
                                
                                #ifdef USE_MPI
                                        }