changes while testing

[mothur.git] / bayesian.cpp

diff --git a/bayesian.cpp b/bayesian.cpp
index 6f65965bfb912e983d4de12dcbaa3dfe307e23e1..8278afb32e1d2c028a83ffdece17ed9910a78e20 100644 (file)
--- a/bayesian.cpp
+++ b/bayesian.cpp
@@ -145,6 +145,8 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) {
 
                                //for each word
                                for (int i = 0; i < numKmers; i++) {
+                    //m->mothurOut("[DEBUG]: kmer = " + toString(i) + "\n");
+                    
                                        if (m->control_pressed) {  break; }
                                        
                                        #ifdef USE_MPI
@@ -239,7 +241,9 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) {
                        }
                }
                
+        if (m->debug) { m->mothurOut("[DEBUG]: about to generateWordPairDiffArr\n"); }
                generateWordPairDiffArr();
+        if (m->debug) { m->mothurOut("[DEBUG]: done generateWordPairDiffArr\n"); }
                
                //save probabilities
                if (rdb->save) { rdb->wordGenusProb = wordGenusProb; rdb->WordPairDiffArr = WordPairDiffArr; }