//create search database and names vector
generateDatabaseAndNames(tfile, tempFile, method, ksize, 0.0, 0.0, 0.0, 0.0);
+ //prevents errors caused by creating shortcut files if you had an error in the sanity check.
+ if (m->control_pressed) { remove(phyloTreeName.c_str()); }
+
genusNodes = phyloTree->getGenusNodes();
genusTotals = phyloTree->getGenusTotals();