changes while testing.

[mothur.git] / bayesian.cpp

diff --git a/bayesian.cpp b/bayesian.cpp
index 54a123c5a7835d7c1a2c48d36fe3ec7070462027..1dc38337aef1bcc3b695ff56e86061cdab58c13d 100644 (file)
--- a/bayesian.cpp
+++ b/bayesian.cpp
@@ -27,7 +27,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) {
                if (baseTName == "saved") { baseTName = rdb->getSavedTaxonomy(); }
                
                /************calculate the probablity that each word will be in a specific taxonomy*************/
-               string tfileroot = baseTName.substr(0,baseTName.find_last_of(".")+1);
+               string tfileroot = m->getFullPathName(baseTName.substr(0,baseTName.find_last_of(".")+1));
                string tempfileroot = m->getRootName(m->getSimpleName(baseName));
                string phyloTreeName = tfileroot + "tree.train";
                string phyloTreeSumName = tfileroot + "tree.sum";
@@ -230,7 +230,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) {
                                delete phyloTree;
                                
                                phyloTree = new PhyloTree(phyloTreeTest, phyloTreeName);
-                               
+                
                                //save probabilities
                                if (rdb->save) { rdb->wordGenusProb = wordGenusProb; rdb->WordPairDiffArr = WordPairDiffArr; }
                        }