adding current file class

[mothur.git] / amovacommand.cpp

diff --git a/amovacommand.cpp b/amovacommand.cpp
index 74fbda7ff6164128551bead9cfb4c8bfabb7ba0e..13c8b2636680ee247cf05750cd57b6d5916b7d9c 100644 (file)
--- a/amovacommand.cpp
+++ b/amovacommand.cpp
@@ -119,8 +119,8 @@ AmovaCommand::AmovaCommand(string option) {
                                phylipFileName = ""; 
                                
                                //check currentFiles for a phylip file
-                               if (currentFiles->getPhylipFile() != "") {  phylipFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + phylipFileName + " as phylip file."); m->mothurOutEndLine();
-                               }else { m->mothurOut("You must provide an phylip file."); m->mothurOutEndLine(); abort = true;  }
+                               //if (currentFiles->getPhylipFile() != "") {  phylipFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + phylipFileName + " as phylip file."); m->mothurOutEndLine();
+                               //}else { m->mothurOut("You must provide an phylip file."); m->mothurOutEndLine(); abort = true;  }
                        }       
                        
                        //check for required parameters
@@ -130,8 +130,8 @@ AmovaCommand::AmovaCommand(string option) {
                                designFileName = "";
                                
                                //check currentFiles for a design file
-                               if (currentFiles->getDesignFile() != "") {  designFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + designFileName + " as phylip file."); m->mothurOutEndLine();
-                               }else { m->mothurOut("You must provide an design file."); m->mothurOutEndLine(); abort = true;  }
+                               //if (currentFiles->getDesignFile() != "") {  designFileName = currentFiles->getDesignFile(); m->mothurOut("Using " + designFileName + " as design file."); m->mothurOutEndLine();
+                               //}else { m->mothurOut("You must provide an design file."); m->mothurOutEndLine(); abort = true;  }
                        }       
 
                        string temp = validParameter.validFile(parameters, "iters", false);