moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / alignmentdb.h

diff --git a/alignmentdb.h b/alignmentdb.h
deleted file mode 100644 (file)
index 537af8d..0000000
--- a/alignmentdb.h
+++ /dev/null
@@ -1,44 +0,0 @@
-#ifndef ALIGNMENTDB_H
-#define ALIGNMENTDB_H
-
-/*
- *  alignmentdb.h
- *  Mothur
- *
- *  Created by westcott on 11/4/09.
- *  Copyright 2009 Schloss Lab. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "sequence.hpp"
-#include "database.hpp"
-
-/**************************************************************************************************/
-
-class AlignmentDB {
-
-public:
-
-       AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
-       AlignmentDB(string);
-       ~AlignmentDB();
-       
-       Sequence findClosestSequence(Sequence*);
-       float getSearchScore()  {  return search->getSearchScore();  }
-       int getLongestBase()    {  return longest;  }
-       
-private:
-       int numSeqs, longest, threadID;
-       string method;
-       
-       Database* search;
-       vector<Sequence> templateSequences;
-       Sequence emptySequence;
-       MothurOut* m;
-};
-
-/**************************************************************************************************/
-
-#endif
-