changes while testing

[mothur.git] / alignmentdb.cpp

diff --git a/alignmentdb.cpp b/alignmentdb.cpp
index 4ce76ea487d4c34f9b9a8f5f56658a2352ff7721..9fec737778e01704e98f5c813e3c0554e7ab0981 100644 (file)
--- a/alignmentdb.cpp
+++ b/alignmentdb.cpp
@@ -47,7 +47,7 @@ AlignmentDB::AlignmentDB(string fastaFileName, string s, int kmerSize, float gap
                        int start = time(NULL);
                        m->mothurOutEndLine();
                        m->mothurOut("Reading in the " + fastaFileName + " template sequences...\t");   cout.flush();
-                       bool aligned = false;
+                       //bool aligned = false;
             int tempLength = 0;
             
                        #ifdef USE_MPI