exit(1);\r
}\r
}\r
-#ifdef USE_MPI \r
-/**************************************************************************************************/\r
-int AlignmentDB::MPISend(int receiver) {\r
- try {\r
- \r
- //send numSeqs - int\r
- MPI_Send(&numSeqs, 1, MPI_INT, receiver, 2001, MPI_COMM_WORLD); \r
- \r
- //send longest - int\r
- MPI_Send(&longest, 1, MPI_INT, receiver, 2001, MPI_COMM_WORLD); \r
- \r
- //send templateSequences\r
- for (int i = 0; i < templateSequences.size(); i++) {\r
- templateSequences[i].MPISend(receiver);\r
- }\r
- \r
- //send Database\r
- search->MPISend(receiver);\r
- \r
- return 0;\r
- }\r
- catch(exception& e) {\r
- m->errorOut(e, "AlignmentDB", "MPISend");\r
- exit(1);\r
- }\r
-}\r
-/**************************************************************************************************/\r
-int AlignmentDB::MPIRecv(int sender) {\r
- try {\r
- MPI_Status status;\r
- //receive numSeqs - int\r
- MPI_Recv(&numSeqs, 1, MPI_INT, sender, 2001, MPI_COMM_WORLD, &status);\r
- \r
- //receive longest - int\r
- MPI_Recv(&longest, 1, MPI_INT, sender, 2001, MPI_COMM_WORLD, &status);\r
-\r
- //receive templateSequences\r
- templateSequences.resize(numSeqs);\r
- for (int i = 0; i < templateSequences.size(); i++) {\r
- templateSequences[i].MPIRecv(sender);\r
- }\r
-\r
- //receive Database\r
- search->MPIRecv(sender);\r
- \r
- for (int i = 0; i < templateSequences.size(); i++) {\r
- search->addSequence(templateSequences[i]);\r
- }\r
- search->generateDB();\r
- search->setNumSeqs(numSeqs);\r
-\r
- return 0;\r
- }\r
- catch(exception& e) {\r
- m->errorOut(e, "AlignmentDB", "MPIRecv");\r
- exit(1);\r
- }\r
-}\r
-#endif\r
/**************************************************************************************************/\r
\r
\r