modified trim.seqs command

[mothur.git] / alignment.cpp

diff --git a/alignment.cpp b/alignment.cpp
index 55ba1a111640588e8426b6337a9600406ccc77cf..95e9dc2b115888a9cd38353aeb67353c1fb71806 100644 (file)
--- a/alignment.cpp
+++ b/alignment.cpp
@@ -41,7 +41,7 @@ void Alignment::traceBack(){                  //      This traceback routine is used by the dynamic
        
        AlignmentCell currentCell = alignment[row][column];     //      Start the traceback from the bottom-right corner of the
                                                                                                                //      matrix
-       
+
        if(currentCell.prevCell == 'x'){        seqAaln = seqBaln = "NOALIGNMENT";              }//If there's an 'x' in the bottom-
        else{                                                                                           //      right corner bail out because it means nothing got aligned
                while(currentCell.prevCell != 'x'){                             //      while the previous cell isn't an 'x', keep going...