adding current file class

[mothur.git] / aligncommand.h

diff --git a/aligncommand.h b/aligncommand.h
index 169b43512375aef99a22029b35425d87d6360afb..d519e9154fecadd04d3e535c3cfe6916e03cabba 100644 (file)
--- a/aligncommand.h
+++ b/aligncommand.h
@@ -15,6 +15,7 @@
 #include "database.hpp"
 #include "alignment.hpp"
 #include "alignmentdb.h"
+#include "mothurfiles.h"
 
 class AlignCommand : public Command {
        
@@ -59,6 +60,7 @@ private:
        vector<string> outputNames;
        
        bool abort, flip, calledHelp;
+       CurrentFile* currentFiles;
 
 };