added [ERROR] flag if command aborts

[mothur.git] / aligncommand.h

diff --git a/aligncommand.h b/aligncommand.h
index 1410626a42e3a407289f18565dd0e64a3d4d3cd4..169b43512375aef99a22029b35425d87d6360afb 100644 (file)
--- a/aligncommand.h
+++ b/aligncommand.h
@@ -58,7 +58,8 @@ private:
        vector<string> candidateFileNames;
        vector<string> outputNames;
        
-       bool abort, flip;
+       bool abort, flip, calledHelp;
+
 };
 
 #endif