changed random forest output filename

[mothur.git] / aligncommand.cpp

diff --git a/aligncommand.cpp b/aligncommand.cpp
index f9c0436c62874864279e533a3258d72bf2f6cf2d..f757a7920bb337883a2a7773f35ed533d2186c80 100644 (file)
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -558,6 +558,7 @@ int AlignCommand::driver(linePair* filePos, string alignFName, string reportFNam
                        if (m->control_pressed) {  break; }
                        
                        Sequence* candidateSeq = new Sequence(inFASTA);  m->gobble(inFASTA);
+            cout  << candidateSeq->getAligned() << endl;
                        report.setCandidate(candidateSeq);
 
                        int origNumBases = candidateSeq->getNumBases();