started work on sffinfo command. fixed bug across all paralellized commands if the...

[mothur.git] / aligncommand.cpp

diff --git a/aligncommand.cpp b/aligncommand.cpp
index 16006f72e602e37270d3f2f8396245f921bd064f..8d1b40f37cd7eb9edfc708e3b9e856092de5eb5a 100644 (file)
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -386,7 +386,7 @@ int AlignCommand::execute(){
                                }
                        }
                        else{
-                               vector<int> positions;
+                               vector<unsigned long int> positions;
                                processIDS.resize(0);
                                
                                ifstream inFASTA;
@@ -396,7 +396,7 @@ int AlignCommand::execute(){
                                while(!inFASTA.eof()){
                                        input = getline(inFASTA);
                                        if (input.length() != 0) {
-                                               if(input[0] == '>'){    long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1);  }
+                                               if(input[0] == '>'){    unsigned long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1); }
                                        }
                                }
                                inFASTA.close();
@@ -406,7 +406,7 @@ int AlignCommand::execute(){
                                int numSeqsPerProcessor = numFastaSeqs / processors;
                                
                                for (int i = 0; i < processors; i++) {
-                                       long int startPos = positions[ i * numSeqsPerProcessor ];
+                                       unsigned long int startPos = positions[ i * numSeqsPerProcessor ];
                                        if(i == processors - 1){
                                                numSeqsPerProcessor = numFastaSeqs - i * numSeqsPerProcessor;
                                        }