adding current file class

[mothur.git] / aligncommand.cpp

diff --git a/aligncommand.cpp b/aligncommand.cpp
index cfedd3b3ca44effd5d1029936c8636db63d568bd..77e99c0b0f4d512ce1c9409207e50fdde18d32c6 100644 (file)
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -79,6 +79,7 @@ AlignCommand::AlignCommand(){
 AlignCommand::AlignCommand(string option)  {
        try {
                abort = false; calledHelp = false;   
+               currentFiles = CurrentFile::getInstance();
        
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true;}