modified chimera commands to process multiple fasta files and added checks to pintail...

[mothur.git] / aligncommand.cpp

diff --git a/aligncommand.cpp b/aligncommand.cpp
index 1f93068d6451d701d6587b7b913bcc0e0856fd90..16006f72e602e37270d3f2f8396245f921bd064f 100644 (file)
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -267,26 +267,14 @@ int AlignCommand::execute(){
                                int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; 
                                int inMode=MPI_MODE_RDONLY; 
                                
-                               //char* outAlignFilename = new char[alignFileName.length()];
-                               //memcpy(outAlignFilename, alignFileName.c_str(), alignFileName.length());
-                               
                                char outAlignFilename[1024];
                                strcpy(outAlignFilename, alignFileName.c_str());
-
-                               //char* outReportFilename = new char[reportFileName.length()];
-                               //memcpy(outReportFilename, reportFileName.c_str(), reportFileName.length());
                                
                                char outReportFilename[1024];
                                strcpy(outReportFilename, reportFileName.c_str());
-
-                               //char* outAccnosFilename = new char[accnosFileName.length()];
-                               //memcpy(outAccnosFilename, accnosFileName.c_str(), accnosFileName.length());
                                
                                char outAccnosFilename[1024];
                                strcpy(outAccnosFilename, accnosFileName.c_str());
-
-                               //char* inFileName = new char[candidateFileNames[s].length()];
-                               //memcpy(inFileName, candidateFileNames[s].c_str(), candidateFileNames[s].length());
                                
                                char inFileName[1024];
                                strcpy(inFileName, candidateFileNames[s].c_str());