A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB73161C573B009860A1 /* taxonomynode.cpp */; };
A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A724D2B6153C8628000A826F /* makebiomcommand.cpp */; };
A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
- A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C211619CCE600651424 /* classifysharedcommand.cpp */; };
A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C241619E52200651424 /* abstractdecisiontree.cpp */; };
A7386C29161A110800651424 /* decisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C28161A110700651424 /* decisiontree.cpp */; };
A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */; };
A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; };
A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
+ A747EC71181EA0F900345732 /* sracommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A747EC70181EA0F900345732 /* sracommand.cpp */; };
A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; };
A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; };
A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; };
A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */; };
A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */; };
A7D755DA1535F679009BF21A /* treereader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D755D91535F679009BF21A /* treereader.cpp */; };
+ A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D9378917B146B5001E90B0 /* wilcox.cpp */; };
A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */; };
A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */; };
A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */; };
A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
A7EEB0F514F29BFE00344B83 /* classifytreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */; };
+ A7F24FC317EA36600021DC9A /* classifyrfsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7F24FC117EA365F0021DC9A /* classifyrfsharedcommand.cpp */; };
A7F9F5CF141A5E500032F693 /* sequenceparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */; };
A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FA10011302E096003860FE /* mantelcommand.cpp */; };
A7FA2AC714A0E881007C09A6 /* bsplvb.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2ABC14A0E881007C09A6 /* bsplvb.f */; };
outputFiles = (
"$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o",
);
- script = "/usr/local/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o";
+ script = "/usr/local/gfortran/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o";
};
/* End PBXBuildRule section */
A7386C1E1619CACB00651424 /* macros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = macros.h; sourceTree = "<group>"; };
A7386C1F1619CACB00651424 /* randomforest.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = randomforest.hpp; sourceTree = "<group>"; };
A7386C201619CACB00651424 /* rftreenode.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rftreenode.hpp; sourceTree = "<group>"; };
- A7386C211619CCE600651424 /* classifysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifysharedcommand.cpp; sourceTree = "<group>"; };
- A7386C221619CCE600651424 /* classifysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifysharedcommand.h; sourceTree = "<group>"; };
A7386C241619E52200651424 /* abstractdecisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = abstractdecisiontree.cpp; sourceTree = "<group>"; };
A7386C28161A110700651424 /* decisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = decisiontree.cpp; sourceTree = "<group>"; };
A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = loadlogfilecommand.h; sourceTree = "<group>"; };
A741744B175CD9B1007DF49B /* makelefsecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makelefsecommand.h; sourceTree = "<group>"; };
A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencecountparser.cpp; sourceTree = "<group>"; };
A741FAD415D168A00067BCC5 /* sequencecountparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencecountparser.h; sourceTree = "<group>"; };
+ A747EC6F181EA0E500345732 /* sracommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = sracommand.h; sourceTree = "<group>"; };
+ A747EC70181EA0F900345732 /* sracommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sracommand.cpp; sourceTree = "<group>"; };
A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kruskalwalliscommand.cpp; sourceTree = "<group>"; };
A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = kruskalwalliscommand.h; sourceTree = "<group>"; };
A74A9A9D148E881E00AB5E3E /* spline.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = spline.h; sourceTree = "<group>"; };
A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = renameseqscommand.cpp; sourceTree = "<group>"; };
A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treereader.h; sourceTree = "<group>"; };
A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treereader.cpp; sourceTree = "<group>"; };
+ A7D9378917B146B5001E90B0 /* wilcox.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = wilcox.cpp; sourceTree = "<group>"; };
+ A7D9378B17B15215001E90B0 /* wilcox.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = wilcox.h; sourceTree = "<group>"; };
A7DAAFA3133A254E003956EB /* commandparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = commandparameter.h; sourceTree = "<group>"; };
A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsedistancematrix.cpp; sourceTree = "<group>"; };
A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sparsedistancematrix.h; sourceTree = "<group>"; };
A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = "<group>"; };
A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifytreecommand.cpp; sourceTree = "<group>"; };
A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifytreecommand.h; sourceTree = "<group>"; };
+ A7F24FC117EA365F0021DC9A /* classifyrfsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyrfsharedcommand.cpp; sourceTree = "<group>"; };
+ A7F24FC217EA365F0021DC9A /* classifyrfsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyrfsharedcommand.h; sourceTree = "<group>"; };
A7F9F5CD141A5E500032F693 /* sequenceparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequenceparser.h; sourceTree = "<group>"; };
A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequenceparser.cpp; sourceTree = "<group>"; };
A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = "<group>"; };
A7E9B73A12D37EC400DA6239 /* libshuff.h */,
A7FC480C12D788F20055BC5C /* linearalgebra.h */,
A7FC480D12D788F20055BC5C /* linearalgebra.cpp */,
+ A7D9378B17B15215001E90B0 /* wilcox.h */,
+ A7D9378917B146B5001E90B0 /* wilcox.cpp */,
A7E9BA5612D39BD800DA6239 /* metastats */,
A7E9B75B12D37EC400DA6239 /* mothur.cpp */,
A7E9B75C12D37EC400DA6239 /* mothur.h */,
A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */,
A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */,
A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */,
- A7386C221619CCE600651424 /* classifysharedcommand.h */,
- A7386C211619CCE600651424 /* classifysharedcommand.cpp */,
+ A7F24FC217EA365F0021DC9A /* classifyrfsharedcommand.h */,
+ A7F24FC117EA365F0021DC9A /* classifyrfsharedcommand.cpp */,
A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */,
A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */,
A7E9B69712D37EC400DA6239 /* clearcutcommand.h */,
A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */,
+ A747EC6F181EA0E500345732 /* sracommand.h */,
+ A747EC70181EA0F900345732 /* sracommand.cpp */,
A7E9B85012D37EC400DA6239 /* subsamplecommand.h */,
A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */,
A7E9B85812D37EC400DA6239 /* summarycommand.h */,
A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */,
A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */,
A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */,
- A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */,
A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */,
A7386C29161A110800651424 /* decisiontree.cpp in Sources */,
A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */,
A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */,
A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */,
A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */,
+ A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */,
+ A7F24FC317EA36600021DC9A /* classifyrfsharedcommand.cpp in Sources */,
+ A747EC71181EA0F900345732 /* sracommand.cpp in Sources */,
);
runOnlyForDeploymentPostprocessing = 0;
};
"DSTROOT[sdk=*]" = TARGET_BUILD_DIR;
GCC_DYNAMIC_NO_PIC = NO;
GCC_MODEL_TUNING = G5;
- GCC_OPTIMIZATION_LEVEL = 3;
+ GCC_OPTIMIZATION_LEVEL = 0;
"INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR;
PRODUCT_NAME = mothur;
- SDKROOT = macosx10.8;
+ SDKROOT = macosx;
SKIP_INSTALL = NO;
};
name = Debug;
DEPLOYMENT_LOCATION = YES;
DSTROOT = TARGET_BUILD_DIR;
GCC_MODEL_TUNING = G5;
- GCC_OPTIMIZATION_LEVEL = 3;
+ GCC_OPTIMIZATION_LEVEL = 0;
GCC_WARN_UNUSED_VALUE = YES;
PRODUCT_NAME = mothur;
SDKROOT = macosx;
GCC_ENABLE_SSE3_EXTENSIONS = NO;
GCC_ENABLE_SSE41_EXTENSIONS = NO;
GCC_ENABLE_SSE42_EXTENSIONS = NO;
- GCC_OPTIMIZATION_LEVEL = s;
+ GCC_OPTIMIZATION_LEVEL = 3;
GCC_PREPROCESSOR_DEFINITIONS = (
"MOTHUR_FILES=\"\\\"../../release\\\"\"",
- "VERSION=\"\\\"1.31.0\\\"\"",
- "RELEASE_DATE=\"\\\"5/24/2013\\\"\"",
+ "VERSION=\"\\\"1.32.0\\\"\"",
+ "RELEASE_DATE=\"\\\"10/31/2013\\\"\"",
);
+ GCC_VERSION = "";
"GCC_VERSION[arch=*]" = "";
GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
GCC_WARN_ABOUT_RETURN_TYPE = YES;
"-lncurses",
"-lreadline",
);
- SDKROOT = macosx;
+ SDKROOT = macosx10.8;
SKIP_INSTALL = NO;
USER_HEADER_SEARCH_PATHS = "";
};
GCC_C_LANGUAGE_STANDARD = gnu99;
GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
GCC_MODEL_TUNING = "";
- GCC_OPTIMIZATION_LEVEL = s;
+ GCC_OPTIMIZATION_LEVEL = 3;
GCC_PREPROCESSOR_DEFINITIONS = (
- "VERSION=\"\\\"1.31.0\\\"\"",
- "RELEASE_DATE=\"\\\"5/24/2013\\\"\"",
+ "VERSION=\"\\\"1.32.1\\\"\"",
+ "RELEASE_DATE=\"\\\"10/16/2013\\\"\"",
);
+ GCC_VERSION = "";
GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
GCC_WARN_ABOUT_RETURN_TYPE = YES;
GCC_WARN_MISSING_PARENTHESES = YES;
"-lncurses",
"-lreadline",
);
- SDKROOT = macosx;
+ SDKROOT = macosx10.8;
SKIP_INSTALL = NO;
};
name = Release;
projects / mothur.git / blobdiff