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A7DA205C113FECD400BF472F /* getlabelcommand.cpp */,
A7DA205D113FECD400BF472F /* getlabelcommand.h */,
+ A787A24F124CB46C0076EB84 /* getlineagecommand.h */,
+ A787A250124CB46C0076EB84 /* getlineagecommand.cpp */,
A7DA205F113FECD400BF472F /* getlistcountcommand.h */,
A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */,
A7DA2061113FECD400BF472F /* getoturepcommand.h */,
A7DA2060113FECD400BF472F /* getoturepcommand.cpp */,
A7DA2062113FECD400BF472F /* getrabundcommand.cpp */,
A7DA2063113FECD400BF472F /* getrabundcommand.h */,
+ A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */,
+ A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */,
A7DA2064113FECD400BF472F /* getsabundcommand.cpp */,
A7DA2065113FECD400BF472F /* getsabundcommand.h */,
A7DA2067113FECD400BF472F /* getseqscommand.h */,
A7DA207D113FECD400BF472F /* heatmapsimcommand.h */,
A7DA207E113FECD400BF472F /* helpcommand.cpp */,
A7DA207F113FECD400BF472F /* helpcommand.h */,
- A7DA208D113FECD400BF472F /* libshuffcommand.cpp */,
A7DA208E113FECD400BF472F /* libshuffcommand.h */,
+ A7DA208D113FECD400BF472F /* libshuffcommand.cpp */,
A7DA2090113FECD400BF472F /* listseqscommand.h */,
A7DA208F113FECD400BF472F /* listseqscommand.cpp */,
A703FE931194645F002C397E /* makegroupcommand.h */,
A7DA2099113FECD400BF472F /* matrixoutputcommand.h */,
A7DA209A113FECD400BF472F /* mergefilecommand.cpp */,
A7DA209B113FECD400BF472F /* mergefilecommand.h */,
+ A7F6C8EA12423C0300299875 /* metastatscommand.h */,
+ A7F6C8EB12423C0300299875 /* metastatscommand.cpp */,
A7DA209C113FECD400BF472F /* mgclustercommand.cpp */,
A7DA209D113FECD400BF472F /* mgclustercommand.h */,
A7DA20AC113FECD400BF472F /* nocommands.cpp */,
A7DA20AD113FECD400BF472F /* nocommands.h */,
+ A798626D1240D91B005FC847 /* normalizesharedcommand.h */,
+ A798626E1240D91B005FC847 /* normalizesharedcommand.cpp */,
A7DA20B8113FECD400BF472F /* otuhierarchycommand.cpp */,
A7DA20B9113FECD400BF472F /* otuhierarchycommand.h */,
+ A724C2B61254961E006BB1C7 /* parsefastaqcommand.h */,
+ A724C2B71254961E006BB1C7 /* parsefastaqcommand.cpp */,
A7DA20BC113FECD400BF472F /* parselistscommand.cpp */,
A7DA20BD113FECD400BF472F /* parselistscommand.h */,
- A7E8338B115BBDAA00739EC4 /* parsesffcommand.cpp */,
A7E8338C115BBDAA00739EC4 /* parsesffcommand.h */,
+ A7E8338B115BBDAA00739EC4 /* parsesffcommand.cpp */,
A7DA20C0113FECD400BF472F /* parsimonycommand.cpp */,
A7DA20C1113FECD400BF472F /* parsimonycommand.h */,
A7DA20C3113FECD400BF472F /* pcacommand.h */,
A7DA20EA113FECD400BF472F /* readotucommand.cpp */,
A7DA20F1113FECD400BF472F /* readtreecommand.h */,
A7DA20F0113FECD400BF472F /* readtreecommand.cpp */,
+ A787A28E124CE1470076EB84 /* removelineagecommand.h */,
+ A787A28F124CE1470076EB84 /* removelineagecommand.cpp */,
A7DA20F3113FECD400BF472F /* removeseqscommand.h */,
A7DA20F2113FECD400BF472F /* removeseqscommand.cpp */,
A7DA20F5113FECD400BF472F /* reversecommand.h */,
A7DA20F8113FECD400BF472F /* screenseqscommand.cpp */,
A7DA20FB113FECD400BF472F /* secondarystructurecommand.h */,
A7DA20FA113FECD400BF472F /* secondarystructurecommand.cpp */,
+ 7EA299BA11E384940022D8D3 /* sensspeccommand.h */,
+ 7EA299BB11E384940022D8D3 /* sensspeccommand.cpp */,
+ 7E84528511EF4BEB00564975 /* seqerrorcommand.h */,
+ 7E84528611EF4BEB00564975 /* seqerrorcommand.cpp */,
A7DA20FD113FECD400BF472F /* seqsummarycommand.h */,
A7DA20FC113FECD400BF472F /* seqsummarycommand.cpp */,
A7DA2103113FECD400BF472F /* setdircommand.h */,
A7DA2102113FECD400BF472F /* setdircommand.cpp */,
A76C4A1011876BAF0009460B /* setlogfilecommand.h */,
A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */,
+ A732505E11E49EF100484B90 /* sffinfocommand.h */,
+ A732505F11E49EF100484B90 /* sffinfocommand.cpp */,
A7DA2110113FECD400BF472F /* sharedcommand.h */,
A7DA210F113FECD400BF472F /* sharedcommand.cpp */,
A71D924511AEB42400D00CBC /* splitabundcommand.h */,
A71D924411AEB42400D00CBC /* splitabundcommand.cpp */,
+ A7F139481247C3CB0033324C /* splitgroupscommand.h */,
+ A7F139491247C3CB0033324C /* splitgroupscommand.cpp */,
A7DA2155113FECD400BF472F /* summarycommand.h */,
A7DA2154113FECD400BF472F /* summarycommand.cpp */,
A7DA2159113FECD400BF472F /* summarysharedcommand.h */,
A7DA20A3113FECD400BF472F /* nameassignment.hpp */,
A7DA20B6113FECD400BF472F /* ordervector.cpp */,
A7DA20B7113FECD400BF472F /* ordervector.hpp */,
- A7DA20D2113FECD400BF472F /* rabundvector.cpp */,
+ 7E85BD1C11EB5E9B00FD37C0 /* qualityscores.h */,
+ 7E85BD1D11EB5E9B00FD37C0 /* qualityscores.cpp */,
A7DA20D3113FECD400BF472F /* rabundvector.hpp */,
+ A7DA20D2113FECD400BF472F /* rabundvector.cpp */,
A7DA20F6113FECD400BF472F /* sabundvector.cpp */,
A7DA20F7113FECD400BF472F /* sabundvector.hpp */,
A7DA20FE113FECD400BF472F /* sequence.cpp */,
A7DA212B113FECD400BF472F /* sharedordervector.h */,
A7DA212C113FECD400BF472F /* sharedrabundvector.cpp */,
A7DA212D113FECD400BF472F /* sharedrabundvector.h */,
- A7DA212E113FECD400BF472F /* sharedsabundvector.cpp */,
+ A7AE6302121C3408001DE6FC /* sharedrabundfloatvector.h */,
+ A7AE6303121C3408001DE6FC /* sharedrabundfloatvector.cpp */,
A7DA212F113FECD400BF472F /* sharedsabundvector.h */,
+ A7DA212E113FECD400BF472F /* sharedsabundvector.cpp */,
A7DA214C113FECD400BF472F /* sparsematrix.cpp */,
A7DA214D113FECD400BF472F /* sparsematrix.hpp */,
A7DA214E113FECD400BF472F /* suffixdb.cpp */,
name = read;
sourceTree = "<group>";
};
+ A7DF0AE5121EBC26004A03EA /* clearcutsource */ = {
+ isa = PBXGroup;
+ children = (
+ A7DF0AD4121EBB14004A03EA /* clearcut.h */,
+ A71BA75F1225694E00C57506 /* clearcut.cpp */,
+ A7DF0AD7121EBB14004A03EA /* common.h */,
+ A7DF0AD8121EBB14004A03EA /* dayhoff.h */,
+ A7DF0AD6121EBB14004A03EA /* cmdargs.h */,
+ A7DF0AD5121EBB14004A03EA /* cmdargs.cpp */,
+ A7DF0AD9121EBB14004A03EA /* distclearcut.cpp */,
+ A7DF0ADA121EBB14004A03EA /* distclearcut.h */,
+ A7DF0ADB121EBB14004A03EA /* dmat.cpp */,
+ A7DF0ADC121EBB14004A03EA /* dmat.h */,
+ A7DF0ADD121EBB14004A03EA /* fasta.cpp */,
+ A7DF0ADE121EBB14004A03EA /* fasta.h */,
+ A7DF0ADF121EBB14004A03EA /* getopt_long.cpp */,
+ A7DF0AE0121EBB14004A03EA /* getopt_long.h */,
+ A7DF0AE2121EBB14004A03EA /* prng.h */,
+ A7DF0AE1121EBB14004A03EA /* prng.cpp */,
+ );
+ name = clearcutsource;
+ sourceTree = "<group>";
+ };
+ A7F6C8DC1242299300299875 /* metastatsource */ = {
+ isa = PBXGroup;
+ children = (
+ A7F6C8E2124229F900299875 /* fisher2.h */,
+ A7F6C8E1124229F900299875 /* fisher2.c */,
+ A7F6C9D512425D4600299875 /* metastats.h */,
+ A7F6C8E3124229F900299875 /* metastats2.c */,
+ );
+ name = metastatsource;
+ sourceTree = "<group>";
+ };
/* End PBXGroup section */
/* Begin PBXLegacyTarget section */
projects / mothur.git / blobdiff