]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
fixed bug in corr.axes so that it now uses the shared files bin numbers. finished...
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index d1cb6d8776158e5749eef9d0112a6a2a97d8acb6..b181f5b68fee47805e3691c67d4ba5fd8af82f3e 100644 (file)
@@ -3,7 +3,7 @@
        archiveVersion = 1;
        classes = {
        };
-       objectVersion = 45;
+       objectVersion = 46;
        objects = {
 
 /* Begin PBXBuildFile section */
@@ -18,6 +18,7 @@
                A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
                A73DDBBA13C4A0D1006AAE38 /* clearmemorycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */; };
                A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
+               A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; };
                A74D3687137DAB8300332B0C /* addtargets2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D3655137DAB8300332B0C /* addtargets2.cpp */; };
                A74D3688137DAB8400332B0C /* alignchime.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D3656137DAB8300332B0C /* alignchime.cpp */; };
                A74D3689137DAB8400332B0C /* alignchimel.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D3657137DAB8300332B0C /* alignchimel.cpp */; };
                A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; };
                A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; };
                A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
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                A77410F614697C300098E6AC /* seqnoise.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77410F414697C300098E6AC /* seqnoise.cpp */; };
                A778FE6B134CA6CA00C0BA33 /* getcommandinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */; };
                A77A221F139001B600B0BE70 /* deuniquetreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */; };
+               A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */; };
+               A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; };
                A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; };
                A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; };
                A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; };
+               A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */; };
+               A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */; };
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                A7BF221414587886000AD524 /* myPerseus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF221214587886000AD524 /* myPerseus.cpp */; };
                A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; };
+               A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; };
+               A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */; };
                A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
                A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
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                A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */; };
                A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */; };
                A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */; };
-               A7E9B8C712D37EC400DA6239 /* fisher2.c in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E512D37EC400DA6239 /* fisher2.c */; };
                A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E712D37EC400DA6239 /* flowdata.cpp */; };
                A7E9B8C912D37EC400DA6239 /* formatcolumn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */; };
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                A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */; };
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                A7E9B8FF12D37EC400DA6239 /* metastatscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */; };
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                A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */; };
                A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
+               A7EEB0F514F29BFE00344B83 /* classifytreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */; };
                A7F9F5CF141A5E500032F693 /* sequenceparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */; };
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+               A7FA2AC714A0E881007C09A6 /* bsplvb.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2ABC14A0E881007C09A6 /* bsplvb.f */; };
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+               A7FA2ACA14A0E881007C09A6 /* daxpy.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2ABF14A0E881007C09A6 /* daxpy.f */; };
+               A7FA2ACB14A0E881007C09A6 /* ddot.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2AC014A0E881007C09A6 /* ddot.f */; };
+               A7FA2ACC14A0E881007C09A6 /* dpbfa.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2AC114A0E881007C09A6 /* dpbfa.f */; };
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+               A7FA2ACE14A0E881007C09A6 /* interv.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2AC314A0E881007C09A6 /* interv.f */; };
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+               A7FA2AD014A0E881007C09A6 /* sinerp.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2AC514A0E881007C09A6 /* sinerp.f */; };
+               A7FA2AD114A0E881007C09A6 /* stxwx.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2AC614A0E881007C09A6 /* stxwx.f */; };
+               A7FA2B1614A0EBEA007C09A6 /* sslvrg.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */; };
+               A7FA2B5B14A0F0C2007C09A6 /* intrv.f in Sources */ = {isa = PBXBuildFile; fileRef = A7FA2B5A14A0F0C2007C09A6 /* intrv.f */; };
                A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC480D12D788F20055BC5C /* linearalgebra.cpp */; };
                A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC486612D795D60055BC5C /* pcacommand.cpp */; };
                A7FE7C401330EA1000F7B327 /* getcurrentcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */; };
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 /* End PBXBuildFile section */
 
+/* Begin PBXBuildRule section */
+               A7D162CB149F96CA000523E8 /* PBXBuildRule */ = {
+                       isa = PBXBuildRule;
+                       compilerSpec = com.apple.compilers.proxy.script;
+                       fileType = sourcecode.fortran;
+                       isEditable = 1;
+                       outputFiles = (
+                               "$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o",
+                       );
+                       script = "/usr/local/gfortran/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o";
+               };
+/* End PBXBuildRule section */
+
 /* Begin PBXCopyFilesBuildPhase section */
                8DD76FAF0486AB0100D96B5E /* CopyFiles */ = {
                        isa = PBXCopyFilesBuildPhase;
                A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearmemorycommand.cpp; sourceTree = "<group>"; };
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                A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurmetastats.cpp; sourceTree = "<group>"; };
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+               A74A9A9E148E881E00AB5E3E /* spline.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = spline.cpp; sourceTree = "<group>"; };
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+               A77EBD2C1523707F00ED407C /* createdatabasecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = createdatabasecommand.h; sourceTree = "<group>"; };
+               A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = createdatabasecommand.cpp; sourceTree = "<group>"; };
+               A7876A25152A017C00A0AE86 /* subsample.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = subsample.cpp; sourceTree = "<group>"; };
+               A7876A28152A018B00A0AE86 /* subsample.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = subsample.h; sourceTree = "<group>"; };
                A79234D513C74BF6002B08E2 /* mothurfisher.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurfisher.h; sourceTree = "<group>"; };
                A79234D613C74BF6002B08E2 /* mothurfisher.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurfisher.cpp; sourceTree = "<group>"; };
                A795840B13F13CD900F201D5 /* countgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = countgroupscommand.h; sourceTree = "<group>"; };
                A795840C13F13CD900F201D5 /* countgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = countgroupscommand.cpp; sourceTree = "<group>"; };
                A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makefastqcommand.h; sourceTree = "<group>"; };
                A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = "<group>"; };
+               A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sortseqscommand.cpp; sourceTree = "<group>"; };
+               A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sortseqscommand.h; sourceTree = "<group>"; };
+               A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuassociationcommand.cpp; sourceTree = "<group>"; };
+               A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = otuassociationcommand.h; sourceTree = "<group>"; };
                A7A61F1A130035C800E05B6B /* LICENSE */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = LICENSE; sourceTree = "<group>"; };
                A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = amovacommand.h; sourceTree = "<group>"; };
                A7A61F2C130062E000E05B6B /* amovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = amovacommand.cpp; sourceTree = "<group>"; };
                A7BF221314587886000AD524 /* myPerseus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = myPerseus.h; sourceTree = "<group>"; };
                A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraperseuscommand.h; sourceTree = "<group>"; };
                A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraperseuscommand.cpp; sourceTree = "<group>"; };
+               A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cooccurrencecommand.cpp; sourceTree = "<group>"; };
+               A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = cooccurrencecommand.h; sourceTree = "<group>"; };
+               A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trialSwap2.cpp; sourceTree = "<group>"; };
+               A7C3DC0E14FE469500FE1924 /* trialswap2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trialswap2.h; sourceTree = "<group>"; };
                A7DAAFA3133A254E003956EB /* commandparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = commandparameter.h; sourceTree = "<group>"; };
                A7E9B64F12D37EC300DA6239 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
                A7E9B65012D37EC300DA6239 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
                A7E9B6E212D37EC400DA6239 /* filters.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filters.h; sourceTree = "<group>"; };
                A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filterseqscommand.cpp; sourceTree = "<group>"; };
                A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filterseqscommand.h; sourceTree = "<group>"; };
-               A7E9B6E512D37EC400DA6239 /* fisher2.c */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.c; path = fisher2.c; sourceTree = "<group>"; };
-               A7E9B6E612D37EC400DA6239 /* fisher2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fisher2.h; sourceTree = "<group>"; };
                A7E9B6E712D37EC400DA6239 /* flowdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = flowdata.cpp; sourceTree = "<group>"; };
                A7E9B6E812D37EC400DA6239 /* flowdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = flowdata.h; sourceTree = "<group>"; };
                A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatcolumn.cpp; sourceTree = "<group>"; };
                A7E9B75212D37EC400DA6239 /* mempearson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mempearson.h; sourceTree = "<group>"; };
                A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergefilecommand.cpp; sourceTree = "<group>"; };
                A7E9B75412D37EC400DA6239 /* mergefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergefilecommand.h; sourceTree = "<group>"; };
-               A7E9B75512D37EC400DA6239 /* metastats.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = metastats.h; sourceTree = "<group>"; };
-               A7E9B75612D37EC400DA6239 /* metastats2.c */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.c; path = metastats2.c; sourceTree = "<group>"; };
                A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = metastatscommand.cpp; sourceTree = "<group>"; };
                A7E9B75812D37EC400DA6239 /* metastatscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = metastatscommand.h; sourceTree = "<group>"; };
                A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mgclustercommand.cpp; sourceTree = "<group>"; };
                A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = SOURCE_ROOT; };
                A7E9B87F12D37EC400DA6239 /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = whittaker.cpp; sourceTree = "<group>"; };
                A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = "<group>"; };
+               A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifytreecommand.cpp; sourceTree = "<group>"; };
+               A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifytreecommand.h; sourceTree = "<group>"; };
                A7F9F5CD141A5E500032F693 /* sequenceparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequenceparser.h; sourceTree = "<group>"; };
                A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequenceparser.cpp; sourceTree = "<group>"; };
                A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = "<group>"; };
                A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mantelcommand.cpp; sourceTree = "<group>"; };
+               A7FA2ABC14A0E881007C09A6 /* bsplvb.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = bsplvb.f; sourceTree = "<group>"; };
+               A7FA2ABD14A0E881007C09A6 /* bsplvd.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = bsplvd.f; sourceTree = "<group>"; };
+               A7FA2ABE14A0E881007C09A6 /* bvalue.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = bvalue.f; sourceTree = "<group>"; };
+               A7FA2ABF14A0E881007C09A6 /* daxpy.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = daxpy.f; sourceTree = "<group>"; };
+               A7FA2AC014A0E881007C09A6 /* ddot.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = ddot.f; sourceTree = "<group>"; };
+               A7FA2AC114A0E881007C09A6 /* dpbfa.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbfa.f; sourceTree = "<group>"; };
+               A7FA2AC214A0E881007C09A6 /* dpbsl.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbsl.f; sourceTree = "<group>"; };
+               A7FA2AC314A0E881007C09A6 /* interv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = interv.f; sourceTree = "<group>"; };
+               A7FA2AC414A0E881007C09A6 /* sgram.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sgram.f; sourceTree = "<group>"; };
+               A7FA2AC514A0E881007C09A6 /* sinerp.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sinerp.f; sourceTree = "<group>"; };
+               A7FA2AC614A0E881007C09A6 /* stxwx.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = stxwx.f; sourceTree = "<group>"; };
+               A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sslvrg.f; sourceTree = "<group>"; };
+               A7FA2B5A14A0F0C2007C09A6 /* intrv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = intrv.f; sourceTree = "<group>"; };
                A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = linearalgebra.h; sourceTree = "<group>"; };
                A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
                A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcacommand.h; sourceTree = "<group>"; };
                                A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */,
                                A7E9B83012D37EC400DA6239 /* slibshuff.cpp */,
                                A7E9B83112D37EC400DA6239 /* slibshuff.h */,
+                               A7876A28152A018B00A0AE86 /* subsample.h */,
+                               A7876A25152A017C00A0AE86 /* subsample.cpp */,
+                               A7C3DC0E14FE469500FE1924 /* trialswap2.h */,
+                               A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */,
                                A7FF19F0140FFDA500AD216D /* trimoligos.h */,
                                A7FF19F1140FFDA500AD216D /* trimoligos.cpp */,
                                A7E9B87412D37EC400DA6239 /* validcalculator.cpp */,
                        name = uchime;
                        sourceTree = "<group>";
                };
+               A7D161E7149F7F50000523E8 /* fortran */ = {
+                       isa = PBXGroup;
+                       children = (
+                               A7FA2B5A14A0F0C2007C09A6 /* intrv.f */,
+                               A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */,
+                               A7FA2ABC14A0E881007C09A6 /* bsplvb.f */,
+                               A7FA2ABD14A0E881007C09A6 /* bsplvd.f */,
+                               A7FA2ABE14A0E881007C09A6 /* bvalue.f */,
+                               A7FA2ABF14A0E881007C09A6 /* daxpy.f */,
+                               A7FA2AC014A0E881007C09A6 /* ddot.f */,
+                               A7FA2AC114A0E881007C09A6 /* dpbfa.f */,
+                               A7FA2AC214A0E881007C09A6 /* dpbsl.f */,
+                               A7FA2AC314A0E881007C09A6 /* interv.f */,
+                               A7FA2AC414A0E881007C09A6 /* sgram.f */,
+                               A7FA2AC514A0E881007C09A6 /* sinerp.f */,
+                               A7FA2AC614A0E881007C09A6 /* stxwx.f */,
+                       );
+                       name = fortran;
+                       sourceTree = "<group>";
+               };
                A7E9BA3812D3956100DA6239 /* commands */ = {
                        isa = PBXGroup;
                        children = (
                                A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */,
                                A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */,
                                A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */,
+                               A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */,
+                               A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */,
                                A7E9B69712D37EC400DA6239 /* clearcutcommand.h */,
                                A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */,
                                A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */,
                                A7E9B6B512D37EC400DA6239 /* consensuscommand.cpp */,
                                A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */,
                                A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */,
+                               A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */,
+                               A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */,
                                A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */,
                                A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */,
                                A795840B13F13CD900F201D5 /* countgroupscommand.h */,
                                A795840C13F13CD900F201D5 /* countgroupscommand.cpp */,
                                A7730EFD13967241007433A3 /* countseqscommand.h */,
                                A7730EFE13967241007433A3 /* countseqscommand.cpp */,
+                               A77EBD2C1523707F00ED407C /* createdatabasecommand.h */,
+                               A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */,
                                A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */,
                                A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */,
                                A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */,
                                A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */,
                                A713EBEB12DC7C5E000092AC /* nmdscommand.h */,
                                A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */,
+                               A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */,
+                               A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */,
                                A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */,
                                A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */,
                                A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */,
                                A7FC486612D795D60055BC5C /* pcacommand.cpp */,
                                A7E9B78812D37EC400DA6239 /* pcoacommand.h */,
                                A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */,
+                               A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */,
+                               A76CDD811510F143004C8458 /* prcseqscommand.cpp */,
                                A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */,
                                A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */,
                                A7E9B79212D37EC400DA6239 /* phylotypecommand.h */,
                                A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */,
                                A774101214695AF60098E6AC /* shhhseqscommand.h */,
                                A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
+                               A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */,
+                               A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */,
                                A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
                                A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
                                A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
                A7E9BA5612D39BD800DA6239 /* metastats */ = {
                        isa = PBXGroup;
                        children = (
-                               A7E9B6E512D37EC400DA6239 /* fisher2.c */,
-                               A7E9B6E612D37EC400DA6239 /* fisher2.h */,
-                               A7E9B75512D37EC400DA6239 /* metastats.h */,
-                               A7E9B75612D37EC400DA6239 /* metastats2.c */,
+                               A7D161E7149F7F50000523E8 /* fortran */,
                                A79234D513C74BF6002B08E2 /* mothurfisher.h */,
                                A79234D613C74BF6002B08E2 /* mothurfisher.cpp */,
                                A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */,
                                A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */,
+                               A74A9A9D148E881E00AB5E3E /* spline.h */,
+                               A74A9A9E148E881E00AB5E3E /* spline.cpp */,
                        );
                        name = metastats;
                        sourceTree = "<group>";
                                8DD76FAF0486AB0100D96B5E /* CopyFiles */,
                        );
                        buildRules = (
+                               A7D162CB149F96CA000523E8 /* PBXBuildRule */,
                        );
                        dependencies = (
                        );
                08FB7793FE84155DC02AAC07 /* Project object */ = {
                        isa = PBXProject;
                        attributes = {
+                               LastUpgradeCheck = 0420;
                                ORGANIZATIONNAME = "Schloss Lab";
                        };
                        buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
-                       compatibilityVersion = "Xcode 3.1";
+                       compatibilityVersion = "Xcode 3.2";
                        developmentRegion = English;
                        hasScannedForEncodings = 1;
                        knownRegions = (
                                A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */,
                                A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */,
                                A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */,
-                               A7E9B8C712D37EC400DA6239 /* fisher2.c in Sources */,
                                A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */,
                                A7E9B8C912D37EC400DA6239 /* formatcolumn.cpp in Sources */,
                                A7E9B8CA12D37EC400DA6239 /* formatphylip.cpp in Sources */,
                                A7E9B8FB12D37EC400DA6239 /* memeuclidean.cpp in Sources */,
                                A7E9B8FC12D37EC400DA6239 /* mempearson.cpp in Sources */,
                                A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */,
-                               A7E9B8FE12D37EC400DA6239 /* metastats2.c in Sources */,
                                A7E9B8FF12D37EC400DA6239 /* metastatscommand.cpp in Sources */,
                                A7E9B90012D37EC400DA6239 /* mgclustercommand.cpp in Sources */,
                                A7E9B90112D37EC400DA6239 /* mothur.cpp in Sources */,
                                A774104814696F320098E6AC /* myseqdist.cpp in Sources */,
                                A77410F614697C300098E6AC /* seqnoise.cpp in Sources */,
                                A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */,
+                               A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */,
+                               A7FA2AC714A0E881007C09A6 /* bsplvb.f in Sources */,
+                               A7FA2AC814A0E881007C09A6 /* bsplvd.f in Sources */,
+                               A7FA2AC914A0E881007C09A6 /* bvalue.f in Sources */,
+                               A7FA2ACA14A0E881007C09A6 /* daxpy.f in Sources */,
+                               A7FA2ACB14A0E881007C09A6 /* ddot.f in Sources */,
+                               A7FA2ACC14A0E881007C09A6 /* dpbfa.f in Sources */,
+                               A7FA2ACD14A0E881007C09A6 /* dpbsl.f in Sources */,
+                               A7FA2ACE14A0E881007C09A6 /* interv.f in Sources */,
+                               A7FA2ACF14A0E881007C09A6 /* sgram.f in Sources */,
+                               A7FA2AD014A0E881007C09A6 /* sinerp.f in Sources */,
+                               A7FA2AD114A0E881007C09A6 /* stxwx.f in Sources */,
+                               A7FA2B1614A0EBEA007C09A6 /* sslvrg.f in Sources */,
+                               A7FA2B5B14A0F0C2007C09A6 /* intrv.f in Sources */,
+                               A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */,
+                               A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */,
+                               A7EEB0F514F29BFE00344B83 /* classifytreecommand.cpp in Sources */,
+                               A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */,
+                               A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */,
+                               A76CDD821510F143004C8458 /* prcseqscommand.cpp in Sources */,
+                               A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */,
+                               A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };
                                ALWAYS_SEARCH_USER_PATHS = NO;
                                COPY_PHASE_STRIP = NO;
                                GCC_DYNAMIC_NO_PIC = NO;
-                               GCC_ENABLE_FIX_AND_CONTINUE = YES;
                                GCC_MODEL_TUNING = G5;
                                GCC_OPTIMIZATION_LEVEL = 0;
                                INSTALL_PATH = /usr/local/bin;
                                GCC_ENABLE_SSE3_EXTENSIONS = NO;
                                GCC_ENABLE_SSE41_EXTENSIONS = NO;
                                GCC_ENABLE_SSE42_EXTENSIONS = NO;
-                               GCC_OPTIMIZATION_LEVEL = 3;
+                               GCC_OPTIMIZATION_LEVEL = 0;
                                GCC_PREPROCESSOR_DEFINITIONS = (
                                        "MOTHUR_FILES=\"\\\"../release\\\"\"",
-                                       "VERSION=\"\\\"1.22.0\\\"\"",
-                                       "RELEASE_DATE=\"\\\"10/12/2011\\\"\"",
+                                       "VERSION=\"\\\"1.24.0\\\"\"",
+                                       "RELEASE_DATE=\"\\\"3/12/2012\\\"\"",
                                );
+                               "GCC_VERSION[arch=*]" = "";
                                GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
                                GCC_WARN_ABOUT_RETURN_TYPE = YES;
                                GCC_WARN_UNUSED_VARIABLE = YES;
+                               HEADER_SEARCH_PATHS = "";
                                INSTALL_PATH = "";
                                MACH_O_TYPE = mh_execute;
                                ONLY_ACTIVE_ARCH = YES;
                                        "-lncurses",
                                        "-lreadline",
                                );
-                               PREBINDING = NO;
                                SDKROOT = macosx10.6;
+                               USER_HEADER_SEARCH_PATHS = "";
                        };
                        name = Debug;
                };
                                GCC_C_LANGUAGE_STANDARD = gnu99;
                                GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
                                GCC_MODEL_TUNING = "";
-                               GCC_OPTIMIZATION_LEVEL = 3;
+                               GCC_OPTIMIZATION_LEVEL = 0;
                                GCC_PREPROCESSOR_DEFINITIONS = (
-                                       "VERSION=\"\\\"1.19.0\\\"\"",
-                                       "RELEASE_DATE=\"\\\"5/9/2011\\\"\"",
+                                       "VERSION=\"\\\"1.24.0\\\"\"",
+                                       "RELEASE_DATE=\"\\\"3/12/2012\\\"\"",
                                );
                                GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
                                GCC_WARN_ABOUT_RETURN_TYPE = YES;
                                        "-lncurses",
                                        "-lreadline",
                                );
-                               PREBINDING = NO;
                                SDKROOT = macosx10.6;
                        };
                        name = Release;