]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
added heatmap command
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index c6e343c99a644234875b8e86756b2dbae8e1f3d8..a84195d4332a491ff9c0e7f0ff7832f92eccb396 100644 (file)
                3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; };
                374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; };
                3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
+               375873A70F7D61240040F377 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738B0F7D61240040F377 /* coverage.cpp */; };
+               375873A80F7D61240040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738D0F7D61240040F377 /* fullmatrix.cpp */; };
+               375873A90F7D61240040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738F0F7D61240040F377 /* heatmap.cpp */; };
+               375873AA0F7D61240040F377 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873910F7D61240040F377 /* heatmapcommand.cpp */; };
+               375873AB0F7D61240040F377 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873930F7D61240040F377 /* libshuffcommand.cpp */; };
+               375873AC0F7D61240040F377 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873950F7D61240040F377 /* nocommands.cpp */; };
+               375873AD0F7D61240040F377 /* sharedanderberg.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873980F7D61240040F377 /* sharedanderberg.cpp */; };
+               375873AE0F7D61240040F377 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */; };
+               375873AF0F7D61240040F377 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739C0F7D61240040F377 /* sharedkulczynski.cpp */; };
+               375873B00F7D61240040F377 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */; };
+               375873B10F7D61240040F377 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A00F7D61240040F377 /* sharedlennon.cpp */; };
+               375873B20F7D61240040F377 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */; };
+               375873B30F7D61240040F377 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A50F7D61240040F377 /* sharedochiai.cpp */; };
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+               375873E70F7D63E90040F377 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873E50F7D63E90040F377 /* coverage.cpp */; };
+               375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EB0F7D64520040F377 /* fullmatrix.cpp */; };
+               375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EE0F7D646F0040F377 /* heatmap.cpp */; };
+               375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F00F7D64800040F377 /* heatmapcommand.cpp */; };
+               375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F30F7D648F0040F377 /* libshuffcommand.cpp */; };
+               375873F80F7D649C0040F377 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F60F7D649C0040F377 /* nocommands.cpp */; };
+               375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */; };
+               375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */; };
+               375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */; };
+               375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */; };
+               3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */; };
+               3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */; };
                379293C30F2DE73400B9034A /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379293C20F2DE73400B9034A /* treemap.cpp */; };
                379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3792946F0F2E191800B9034A /* parsimonycommand.cpp */; };
                3792948A0F2E258500B9034A /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379294890F2E258500B9034A /* parsimony.cpp */; };
@@ -49,7 +75,6 @@
                37D9286E0F21331F001D4494 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927ED0F21331F001D4494 /* listvector.cpp */; };
                37D9286F0F21331F001D4494 /* mothur.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EF0F21331F001D4494 /* mothur.cpp */; };
                37D928700F21331F001D4494 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F00F21331F001D4494 /* nameassignment.cpp */; };
-               37D928710F21331F001D4494 /* nocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F20F21331F001D4494 /* nocommand.cpp */; };
                37D928720F21331F001D4494 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F40F21331F001D4494 /* npshannon.cpp */; };
                37D928730F21331F001D4494 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F70F21331F001D4494 /* ordervector.cpp */; };
                37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F90F21331F001D4494 /* parselistcommand.cpp */; };
                EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */; };
                EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303EA0F534D9400E8EF26 /* logsd.cpp */; };
                EB9303F90F53517300E8EF26 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303F80F53517300E8EF26 /* geom.cpp */; };
-               EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */; };
 /* End PBXBuildFile section */
 
 /* Begin PBXCopyFilesBuildPhase section */
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+               3758738B0F7D61240040F377 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
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+               3758738E0F7D61240040F377 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
+               3758738F0F7D61240040F377 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = "<group>"; };
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+               375873910F7D61240040F377 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = "<group>"; };
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+               375873940F7D61240040F377 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
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+               3758739B0F7D61240040F377 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
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+               3758739D0F7D61240040F377 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = "<group>"; };
+               3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
+               3758739F0F7D61240040F377 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
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+               375874010F7D64EF0040F377 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
+               375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
+               375874030F7D64EF0040F377 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
+               375874070F7D64FC0040F377 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
+               375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
+               375874090F7D64FC0040F377 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
+               3758740A0F7D64FC0040F377 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
+               3758740B0F7D64FC0040F377 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
                379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
                379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
                3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
                37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
                37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
                37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
-               37D927F20F21331F001D4494 /* nocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommand.cpp; sourceTree = "<group>"; };
-               37D927F30F21331F001D4494 /* nocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommand.h; sourceTree = "<group>"; };
                37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
                37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
                37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
                EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
                EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
                EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
-               EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = jackknife2.h; path = ../jackknife2.h; sourceTree = SOURCE_ROOT; };
-               EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = jackknife2.cpp; path = ../jackknife2.cpp; sourceTree = SOURCE_ROOT; };
 /* End PBXFileReference section */
 
 /* Begin PBXFrameworksBuildPhase section */
                                37D927DD0F21331F001D4494 /* fileoutput.cpp */,
                                37D927E00F21331F001D4494 /* globaldata.hpp */,
                                37D927DF0F21331F001D4494 /* globaldata.cpp */,
+                               375873ED0F7D646F0040F377 /* heatmap.h */,
+                               375873EE0F7D646F0040F377 /* heatmap.cpp */,
                                37D927E60F21331F001D4494 /* inputdata.h */,
                                37D927E50F21331F001D4494 /* inputdata.cpp */,
                                37D927EA0F21331F001D4494 /* kmer.hpp */,
                                37D927EF0F21331F001D4494 /* mothur.cpp */,
                                37D927F10F21331F001D4494 /* nameassignment.hpp */,
                                37D927F00F21331F001D4494 /* nameassignment.cpp */,
+                               3758738B0F7D61240040F377 /* coverage.cpp */,
+                               3758738C0F7D61240040F377 /* coverage.h */,
+                               3758738D0F7D61240040F377 /* fullmatrix.cpp */,
+                               3758738E0F7D61240040F377 /* fullmatrix.h */,
+                               3758738F0F7D61240040F377 /* heatmap.cpp */,
+                               375873900F7D61240040F377 /* heatmap.h */,
+                               375873910F7D61240040F377 /* heatmapcommand.cpp */,
+                               375873920F7D61240040F377 /* heatmapcommand.h */,
+                               375873930F7D61240040F377 /* libshuffcommand.cpp */,
+                               375873940F7D61240040F377 /* libshuffcommand.h */,
+                               375873950F7D61240040F377 /* nocommands.cpp */,
+                               375873960F7D61240040F377 /* nocommands.h */,
+                               375873970F7D61240040F377 /* nseqs.h */,
+                               375873980F7D61240040F377 /* sharedanderberg.cpp */,
+                               375873990F7D61240040F377 /* sharedanderberg.h */,
+                               3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */,
+                               3758739B0F7D61240040F377 /* sharedbraycurtis.h */,
+                               3758739C0F7D61240040F377 /* sharedkulczynski.cpp */,
+                               3758739D0F7D61240040F377 /* sharedkulczynski.h */,
+                               3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */,
+                               3758739F0F7D61240040F377 /* sharedkulczynskicody.h */,
+                               375873A00F7D61240040F377 /* sharedlennon.cpp */,
+                               375873A10F7D61240040F377 /* sharedlennon.h */,
+                               375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */,
+                               375873A30F7D61240040F377 /* sharedmorisitahorn.h */,
+                               375873A40F7D61240040F377 /* sharednseqs.h */,
+                               375873A50F7D61240040F377 /* sharedochiai.cpp */,
+                               375873A60F7D61240040F377 /* sharedochiai.h */,
                                37D927F60F21331F001D4494 /* observable.h */,
                                37D927FC0F21331F001D4494 /* progress.hpp */,
                                37D927FB0F21331F001D4494 /* progress.cpp */,
                                37D927BD0F21331F001D4494 /* calculator.cpp */,
                                37D927B90F21331F001D4494 /* ace.h */,
                                37D927B80F21331F001D4494 /* ace.cpp */,
+                               EB1216860F619B83004A865F /* bergerparker.h */,
+                               EB1216870F619B83004A865F /* bergerparker.cpp */,
                                37D927BC0F21331F001D4494 /* bootstrap.h */,
                                37D927BB0F21331F001D4494 /* bootstrap.cpp */,
+                               EB1216E30F61ACFB004A865F /* bstick.h */,
+                               EB1216E40F61ACFB004A865F /* bstick.cpp */,
                                37D927C00F21331F001D4494 /* chao1.h */,
                                37D927BF0F21331F001D4494 /* chao1.cpp */,
+                               375873E60F7D63E90040F377 /* coverage.h */,
+                               375873E50F7D63E90040F377 /* coverage.cpp */,
                                EB9303F70F53517300E8EF26 /* geom.h */,
                                EB9303F80F53517300E8EF26 /* geom.cpp */,
-                               EB6E68170F5F1C780044E17B /* qstat.h */,
-                               EB6E68180F5F1C780044E17B /* qstat.cpp */,
                                EB9303E90F534D9400E8EF26 /* logsd.h */,
                                EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
-                               EB1216860F619B83004A865F /* bergerparker.h */,
-                               EB1216870F619B83004A865F /* bergerparker.cpp */,
-                               EB1216E30F61ACFB004A865F /* bstick.h */,
-                               EB1216E40F61ACFB004A865F /* bstick.cpp */,
-                               EB1217210F61C9AC004A865F /* sharedkstest.h */,
-                               EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
-                               EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
-                               EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
-                               EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */,
-                               EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */,
+                               EB6E68170F5F1C780044E17B /* qstat.h */,
+                               EB6E68180F5F1C780044E17B /* qstat.cpp */,
                                37D927E80F21331F001D4494 /* jackknife.h */,
                                37D927E70F21331F001D4494 /* jackknife.cpp */,
+                               375873F90F7D64AB0040F377 /* nseqs.h */,
                                37D927F50F21331F001D4494 /* npshannon.h */,
                                37D927F40F21331F001D4494 /* npshannon.cpp */,
                                379294880F2E258500B9034A /* parsimony.h */,
                                37D9281E0F21331F001D4494 /* shannon.cpp */,
                                37D928230F21331F001D4494 /* sharedace.h */,
                                37D928220F21331F001D4494 /* sharedace.cpp */,
+                               375873FA0F7D64D20040F377 /* sharedanderberg.h */,
+                               375873E20F7D63B50040F377 /* sharedanderberg.cpp */,
+                               375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
+                               375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
+                               EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
+                               EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
                                37D928250F21331F001D4494 /* sharedchao1.h */,
                                37D928240F21331F001D4494 /* sharedchao1.cpp */,
                                37D928290F21331F001D4494 /* sharedjabund.h */,
                                37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
                                37D9282D0F21331F001D4494 /* sharedjest.h */,
                                37D9282C0F21331F001D4494 /* sharedjest.cpp */,
+                               EB1217210F61C9AC004A865F /* sharedkstest.h */,
+                               EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
+                               375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */,
+                               375873FF0F7D64EF0040F377 /* sharedlennon.cpp */,
+                               375874000F7D64EF0040F377 /* sharedkulczynski.h */,
+                               375874010F7D64EF0040F377 /* sharedlennon.h */,
+                               375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */,
+                               375874030F7D64EF0040F377 /* sharedkulczynskicody.h */,
+                               375874070F7D64FC0040F377 /* sharedmorisitahorn.h */,
+                               375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */,
+                               375874090F7D64FC0040F377 /* sharedochiai.h */,
+                               3758740A0F7D64FC0040F377 /* sharednseqs.h */,
+                               3758740B0F7D64FC0040F377 /* sharedochiai.cpp */,
                                37D928350F21331F001D4494 /* sharedsobs.h */,
                                37D928340F21331F001D4494 /* sharedsobs.cpp */,
                                37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
                                A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
                                A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
                                A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
+                               375873F00F7D64800040F377 /* heatmapcommand.cpp */,
+                               375873F10F7D64800040F377 /* heatmapcommand.h */,
                                37D927E40F21331F001D4494 /* helpcommand.h */,
                                37D927E30F21331F001D4494 /* helpcommand.cpp */,
-                               37D927F30F21331F001D4494 /* nocommand.h */,
-                               37D927F20F21331F001D4494 /* nocommand.cpp */,
+                               375873F30F7D648F0040F377 /* libshuffcommand.cpp */,
+                               375873F40F7D648F0040F377 /* libshuffcommand.h */,
+                               375873F60F7D649C0040F377 /* nocommands.cpp */,
+                               375873F70F7D649C0040F377 /* nocommands.h */,
                                37D927FA0F21331F001D4494 /* parselistcommand.h */,
                                37D927F90F21331F001D4494 /* parselistcommand.cpp */,
                                3792946E0F2E191800B9034A /* parsimonycommand.h */,
                                37D927D50F21331F001D4494 /* datavector.hpp */,
                                37D927DC0F21331F001D4494 /* fastamap.h */,
                                37D927DB0F21331F001D4494 /* fastamap.cpp */,
+                               375873EA0F7D64520040F377 /* fullmatrix.h */,
+                               375873EB0F7D64520040F377 /* fullmatrix.cpp */,
                                37D927E20F21331F001D4494 /* groupmap.h */,
                                37D927E10F21331F001D4494 /* groupmap.cpp */,
                                37D927EE0F21331F001D4494 /* listvector.hpp */,
                                37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
                                37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
                                37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
-                               37D928710F21331F001D4494 /* nocommand.cpp in Sources */,
                                37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
                                37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
                                37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
                                EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
                                EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
                                EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
-                               EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */,
+                               375873A70F7D61240040F377 /* coverage.cpp in Sources */,
+                               375873A80F7D61240040F377 /* fullmatrix.cpp in Sources */,
+                               375873A90F7D61240040F377 /* heatmap.cpp in Sources */,
+                               375873AA0F7D61240040F377 /* heatmapcommand.cpp in Sources */,
+                               375873AB0F7D61240040F377 /* libshuffcommand.cpp in Sources */,
+                               375873AC0F7D61240040F377 /* nocommands.cpp in Sources */,
+                               375873AD0F7D61240040F377 /* sharedanderberg.cpp in Sources */,
+                               375873AE0F7D61240040F377 /* sharedbraycurtis.cpp in Sources */,
+                               375873AF0F7D61240040F377 /* sharedkulczynski.cpp in Sources */,
+                               375873B00F7D61240040F377 /* sharedkulczynskicody.cpp in Sources */,
+                               375873B10F7D61240040F377 /* sharedlennon.cpp in Sources */,
+                               375873B20F7D61240040F377 /* sharedmorisitahorn.cpp in Sources */,
+                               375873B30F7D61240040F377 /* sharedochiai.cpp in Sources */,
+                               375873E30F7D63B50040F377 /* sharedanderberg.cpp in Sources */,
+                               375873E70F7D63E90040F377 /* coverage.cpp in Sources */,
+                               375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
+                               375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */,
+                               375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */,
+                               375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */,
+                               375873F80F7D649C0040F377 /* nocommands.cpp in Sources */,
+                               375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */,
+                               375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */,
+                               375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */,
+                               375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */,
+                               3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
+                               3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };