objects = {
/* Begin PBXBuildFile section */
+ 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; };
+ 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; };
7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; };
+ 834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */; };
+ 834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */; };
+ 83F25B0C163B031200ABE73D /* forest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 83F25B0A163B031200ABE73D /* forest.cpp */; };
8DD76FB00486AB0100D96B5E /* mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6A0FF2C0290799A04C91782 /* mothur.1 */; };
+ A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotulabelscommand.cpp */; };
+ A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; };
A70332B712D3A13400761E33 /* makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* makefile */; };
+ A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; };
A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71CB15E130B04A2001E7287 /* anosimcommand.cpp */; };
A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */; };
A721765713BB9F7D0014DAAE /* referencedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721765613BB9F7D0014DAAE /* referencedb.cpp */; };
+ A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB66161C570F009860A1 /* alignnode.cpp */; };
+ A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB68161C570F009860A1 /* aligntree.cpp */; };
+ A721AB71161C572A009860A1 /* kmernode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6D161C572A009860A1 /* kmernode.cpp */; };
+ A721AB72161C572A009860A1 /* kmertree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6F161C572A009860A1 /* kmertree.cpp */; };
+ A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB73161C573B009860A1 /* taxonomynode.cpp */; };
A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A724D2B6153C8628000A826F /* makebiomcommand.cpp */; };
A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
+ A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C211619CCE600651424 /* classifysharedcommand.cpp */; };
+ A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C241619E52200651424 /* abstractdecisiontree.cpp */; };
+ A7386C29161A110800651424 /* decisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C28161A110700651424 /* decisiontree.cpp */; };
+ A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */; };
A73DDBBA13C4A0D1006AAE38 /* clearmemorycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */; };
A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
+ A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
+ A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; };
A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; };
+ A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; };
A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; };
+ A74D59A4159A1E2000043046 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; };
A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; };
+ A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */; };
+ A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */; };
A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
A76CDD821510F143004C8458 /* prcseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A76CDD811510F143004C8458 /* prcseqscommand.cpp */; };
A7730EFF13967241007433A3 /* countseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7730EFE13967241007433A3 /* countseqscommand.cpp */; };
A77410F614697C300098E6AC /* seqnoise.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77410F414697C300098E6AC /* seqnoise.cpp */; };
A778FE6B134CA6CA00C0BA33 /* getcommandinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */; };
A77A221F139001B600B0BE70 /* deuniquetreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */; };
+ A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7184173D2240002163C2 /* sparcccommand.cpp */; };
+ A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7186173D4041002163C2 /* randomnumber.cpp */; };
+ A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7189173D40E4002163C2 /* calcsparcc.cpp */; };
+ A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77E1937161B201E00DB1A2A /* randomforest.cpp */; };
+ A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77E193A161B289600DB1A2A /* rftreenode.cpp */; };
A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */; };
A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; };
A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; };
A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; };
+ A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */; };
A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; };
+ A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */; };
+ A7A0671A1562946F0095C8C5 /* listotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */; };
+ A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */; };
A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */; };
A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */; };
A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; };
+ A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B0231416B8244B006BA09E /* removedistscommand.cpp */; };
A7BF221414587886000AD524 /* myPerseus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF221214587886000AD524 /* myPerseus.cpp */; };
A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; };
A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; };
A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */; };
+ A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */; };
+ A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */; };
A7D755DA1535F679009BF21A /* treereader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D755D91535F679009BF21A /* treereader.cpp */; };
+ A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */; };
+ A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */; };
A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65312D37EC300DA6239 /* alignment.cpp */; };
A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B012D37EC400DA6239 /* readblast.cpp */; };
A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B212D37EC400DA6239 /* readcluster.cpp */; };
A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */; };
- A7E9B92C12D37EC400DA6239 /* readdistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */; };
- A7E9B92E12D37EC400DA6239 /* readotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */; };
A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */; };
A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BF12D37EC400DA6239 /* readtree.cpp */; };
- A7E9B93112D37EC400DA6239 /* readtreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */; };
A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */; };
A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */; };
A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */; };
outputFiles = (
"$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o",
);
- script = "/usr/local/gfortran/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o";
+ script = "/usr/local/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o";
};
/* End PBXBuildRule section */
8DD76FAF0486AB0100D96B5E /* CopyFiles */ = {
isa = PBXCopyFilesBuildPhase;
buildActionMask = 8;
- dstPath = /usr/share/man/man1/;
- dstSubfolderSpec = 0;
+ dstPath = Users/SarahsWork/desktop/debug;
+ dstSubfolderSpec = 16;
files = (
8DD76FB00486AB0100D96B5E /* mothur.1 in CopyFiles */,
);
/* End PBXCopyFilesBuildPhase section */
/* Begin PBXFileReference section */
- 7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; name = refchimeratest.h; path = source/refchimeratest.h; sourceTree = "<group>"; };
- 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = refchimeratest.cpp; path = source/refchimeratest.cpp; sourceTree = "<group>"; };
- 7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = eachgapdistignorens.h; path = source/eachgapdistignorens.h; sourceTree = "<group>"; };
- 8DD76FB20486AB0100D96B5E /* Mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = Mothur; sourceTree = BUILT_PRODUCTS_DIR; };
- A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; name = makefile; path = source/makefile; sourceTree = "<group>"; };
- A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readphylipvector.h; path = source/readphylipvector.h; sourceTree = "<group>"; };
- A713EBAB12DC7613000092AC /* readphylipvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readphylipvector.cpp; path = source/readphylipvector.cpp; sourceTree = "<group>"; };
- A713EBEB12DC7C5E000092AC /* nmdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = nmdscommand.h; path = source/nmdscommand.h; sourceTree = "<group>"; };
- A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nmdscommand.cpp; path = source/nmdscommand.cpp; sourceTree = "<group>"; };
- A71CB15E130B04A2001E7287 /* anosimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = anosimcommand.cpp; path = source/anosimcommand.cpp; sourceTree = "<group>"; };
- A71CB15F130B04A2001E7287 /* anosimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = anosimcommand.h; path = source/anosimcommand.h; sourceTree = "<group>"; };
- A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mergegroupscommand.h; path = source/mergegroupscommand.h; sourceTree = "<group>"; };
- A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mergegroupscommand.cpp; path = source/mergegroupscommand.cpp; sourceTree = "<group>"; };
- A721765513BB9F7D0014DAAE /* referencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; name = referencedb.h; path = source/referencedb.h; sourceTree = "<group>"; };
- A721765613BB9F7D0014DAAE /* referencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = referencedb.cpp; path = source/referencedb.cpp; sourceTree = "<group>"; };
- A724D2B4153C8600000A826F /* makebiomcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = makebiomcommand.h; path = source/makebiomcommand.h; sourceTree = "<group>"; };
- A724D2B6153C8628000A826F /* makebiomcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = makebiomcommand.cpp; path = source/makebiomcommand.cpp; sourceTree = "<group>"; };
- A727864212E9E28C00F86ABA /* removerarecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = removerarecommand.h; path = source/removerarecommand.h; sourceTree = "<group>"; };
- A727864312E9E28C00F86ABA /* removerarecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = removerarecommand.cpp; path = source/removerarecommand.cpp; sourceTree = "<group>"; };
- A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clearmemorycommand.h; path = source/clearmemorycommand.h; sourceTree = "<group>"; };
- A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clearmemorycommand.cpp; path = source/clearmemorycommand.cpp; sourceTree = "<group>"; };
- A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mothurmetastats.h; path = source/mothurmetastats.h; sourceTree = "<group>"; };
- A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mothurmetastats.cpp; path = source/mothurmetastats.cpp; sourceTree = "<group>"; };
- A74A9A9D148E881E00AB5E3E /* spline.h */ = {isa = PBXFileReference; fileEncoding = 4; name = spline.h; path = source/spline.h; sourceTree = "<group>"; };
- A74A9A9E148E881E00AB5E3E /* spline.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = spline.cpp; path = source/spline.cpp; sourceTree = "<group>"; };
- A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerauchimecommand.h; path = source/chimerauchimecommand.h; sourceTree = "<group>"; };
- A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerauchimecommand.cpp; path = source/chimerauchimecommand.cpp; sourceTree = "<group>"; };
- A754149514840CF7005850D1 /* summaryqualcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = summaryqualcommand.h; path = source/summaryqualcommand.h; sourceTree = "<group>"; };
- A754149614840CF7005850D1 /* summaryqualcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = summaryqualcommand.cpp; path = source/summaryqualcommand.cpp; sourceTree = "<group>"; };
- A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = homovacommand.h; path = source/homovacommand.h; sourceTree = "<group>"; };
- A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = homovacommand.cpp; path = source/homovacommand.cpp; sourceTree = "<group>"; };
- A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = pcrseqscommand.h; path = source/pcrseqscommand.h; sourceTree = "<group>"; };
- A76CDD811510F143004C8458 /* prcseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = prcseqscommand.cpp; path = source/prcseqscommand.cpp; sourceTree = "<group>"; };
- A7730EFD13967241007433A3 /* countseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = countseqscommand.h; path = source/countseqscommand.h; sourceTree = "<group>"; };
- A7730EFE13967241007433A3 /* countseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = countseqscommand.cpp; path = source/countseqscommand.cpp; sourceTree = "<group>"; };
- A774101214695AF60098E6AC /* shhhseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = shhhseqscommand.h; path = source/shhhseqscommand.h; sourceTree = "<group>"; };
- A774101314695AF60098E6AC /* shhhseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = shhhseqscommand.cpp; path = source/shhhseqscommand.cpp; sourceTree = "<group>"; };
- A774104614696F320098E6AC /* myseqdist.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = myseqdist.cpp; path = source/myseqdist.cpp; sourceTree = "<group>"; };
- A774104714696F320098E6AC /* myseqdist.h */ = {isa = PBXFileReference; fileEncoding = 4; name = myseqdist.h; path = source/myseqdist.h; sourceTree = "<group>"; };
- A77410F414697C300098E6AC /* seqnoise.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = seqnoise.cpp; path = source/seqnoise.cpp; sourceTree = "<group>"; };
- A77410F514697C300098E6AC /* seqnoise.h */ = {isa = PBXFileReference; fileEncoding = 4; name = seqnoise.h; path = source/seqnoise.h; sourceTree = "<group>"; };
- A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getcommandinfocommand.h; path = source/getcommandinfocommand.h; sourceTree = "<group>"; };
- A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getcommandinfocommand.cpp; path = source/getcommandinfocommand.cpp; sourceTree = "<group>"; };
- A77A221D139001B600B0BE70 /* deuniquetreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = deuniquetreecommand.h; path = source/deuniquetreecommand.h; sourceTree = "<group>"; };
- A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = deuniquetreecommand.cpp; path = source/deuniquetreecommand.cpp; sourceTree = "<group>"; };
- A77EBD2C1523707F00ED407C /* createdatabasecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = createdatabasecommand.h; path = source/createdatabasecommand.h; sourceTree = "<group>"; };
- A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = createdatabasecommand.cpp; path = source/createdatabasecommand.cpp; sourceTree = "<group>"; };
- A7876A25152A017C00A0AE86 /* subsample.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = subsample.cpp; path = source/subsample.cpp; sourceTree = "<group>"; };
- A7876A28152A018B00A0AE86 /* subsample.h */ = {isa = PBXFileReference; fileEncoding = 4; name = subsample.h; path = source/subsample.h; sourceTree = "<group>"; };
- A79234D513C74BF6002B08E2 /* mothurfisher.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothurfisher.h; path = source/mothurfisher.h; sourceTree = "<group>"; };
- A79234D613C74BF6002B08E2 /* mothurfisher.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mothurfisher.cpp; path = source/mothurfisher.cpp; sourceTree = "<group>"; };
- A795840B13F13CD900F201D5 /* countgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = countgroupscommand.h; path = source/countgroupscommand.h; sourceTree = "<group>"; };
- A795840C13F13CD900F201D5 /* countgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = countgroupscommand.cpp; path = source/countgroupscommand.cpp; sourceTree = "<group>"; };
- A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = makefastqcommand.h; path = source/makefastqcommand.h; sourceTree = "<group>"; };
- A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = makefastqcommand.cpp; path = source/makefastqcommand.cpp; sourceTree = "<group>"; };
- A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sortseqscommand.cpp; path = source/sortseqscommand.cpp; sourceTree = "<group>"; };
- A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sortseqscommand.h; path = source/sortseqscommand.h; sourceTree = "<group>"; };
- A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = otuassociationcommand.cpp; path = source/otuassociationcommand.cpp; sourceTree = "<group>"; };
- A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = otuassociationcommand.h; path = source/otuassociationcommand.h; sourceTree = "<group>"; };
+ 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = newcommandtemplate.cpp; sourceTree = "<group>"; };
+ 219C1DE11552C508004209F9 /* newcommandtemplate.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = newcommandtemplate.h; sourceTree = "<group>"; };
+ 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcoremicrobiomecommand.cpp; sourceTree = "<group>"; };
+ 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcoremicrobiomecommand.h; sourceTree = "<group>"; };
+ 7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = refchimeratest.h; sourceTree = "<group>"; };
+ 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = refchimeratest.cpp; sourceTree = "<group>"; };
+ 7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapdistignorens.h; sourceTree = "<group>"; };
+ 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = regularizedrandomforest.cpp; sourceTree = "<group>"; };
+ 834D9D571656D7C400E7FAB9 /* regularizedrandomforest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = regularizedrandomforest.h; sourceTree = "<group>"; };
+ 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = regularizeddecisiontree.cpp; sourceTree = "<group>"; };
+ 834D9D5B1656DEC700E7FAB9 /* regularizeddecisiontree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = regularizeddecisiontree.h; sourceTree = "<group>"; };
+ 83F25B0A163B031200ABE73D /* forest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = forest.cpp; sourceTree = "<group>"; };
+ 83F25B0B163B031200ABE73D /* forest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = forest.h; sourceTree = "<group>"; };
+ 8DD76FB20486AB0100D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
+ A70056E5156A93D000924A2D /* getotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getotulabelscommand.cpp; sourceTree = "<group>"; };
+ A70056E8156A93E300924A2D /* getotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getotulabelscommand.h; sourceTree = "<group>"; };
+ A70056E9156AB6D400924A2D /* removeotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeotulabelscommand.h; sourceTree = "<group>"; };
+ A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeotulabelscommand.cpp; sourceTree = "<group>"; };
+ A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = "<group>"; };
+ A7128B1A16B7001200723BE4 /* getdistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getdistscommand.h; sourceTree = "<group>"; };
+ A7128B1C16B7002600723BE4 /* getdistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getdistscommand.cpp; sourceTree = "<group>"; };
+ A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylipvector.h; sourceTree = "<group>"; };
+ A713EBAB12DC7613000092AC /* readphylipvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylipvector.cpp; sourceTree = "<group>"; };
+ A713EBEB12DC7C5E000092AC /* nmdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nmdscommand.h; sourceTree = "<group>"; };
+ A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nmdscommand.cpp; sourceTree = "<group>"; };
+ A71CB15E130B04A2001E7287 /* anosimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = anosimcommand.cpp; sourceTree = "<group>"; };
+ A71CB15F130B04A2001E7287 /* anosimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = anosimcommand.h; sourceTree = "<group>"; };
+ A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergegroupscommand.h; sourceTree = "<group>"; };
+ A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergegroupscommand.cpp; sourceTree = "<group>"; };
+ A721765513BB9F7D0014DAAE /* referencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = referencedb.h; sourceTree = "<group>"; };
+ A721765613BB9F7D0014DAAE /* referencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = referencedb.cpp; sourceTree = "<group>"; };
+ A721AB66161C570F009860A1 /* alignnode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignnode.cpp; sourceTree = "<group>"; };
+ A721AB67161C570F009860A1 /* alignnode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = alignnode.h; sourceTree = "<group>"; };
+ A721AB68161C570F009860A1 /* aligntree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligntree.cpp; sourceTree = "<group>"; };
+ A721AB69161C570F009860A1 /* aligntree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = aligntree.h; sourceTree = "<group>"; };
+ A721AB6D161C572A009860A1 /* kmernode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmernode.cpp; sourceTree = "<group>"; };
+ A721AB6E161C572A009860A1 /* kmernode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = kmernode.h; sourceTree = "<group>"; };
+ A721AB6F161C572A009860A1 /* kmertree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmertree.cpp; sourceTree = "<group>"; };
+ A721AB70161C572A009860A1 /* kmertree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = kmertree.h; sourceTree = "<group>"; };
+ A721AB73161C573B009860A1 /* taxonomynode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = taxonomynode.cpp; sourceTree = "<group>"; };
+ A721AB74161C573B009860A1 /* taxonomynode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = taxonomynode.h; sourceTree = "<group>"; };
+ A724D2B4153C8600000A826F /* makebiomcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makebiomcommand.h; sourceTree = "<group>"; };
+ A724D2B6153C8628000A826F /* makebiomcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makebiomcommand.cpp; sourceTree = "<group>"; };
+ A727864212E9E28C00F86ABA /* removerarecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removerarecommand.h; sourceTree = "<group>"; };
+ A727864312E9E28C00F86ABA /* removerarecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removerarecommand.cpp; sourceTree = "<group>"; };
+ A7386C1B1619CACB00651424 /* abstractdecisiontree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = abstractdecisiontree.hpp; sourceTree = "<group>"; };
+ A7386C1D1619CACB00651424 /* decisiontree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = decisiontree.hpp; sourceTree = "<group>"; };
+ A7386C1E1619CACB00651424 /* macros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = macros.h; sourceTree = "<group>"; };
+ A7386C1F1619CACB00651424 /* randomforest.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = randomforest.hpp; sourceTree = "<group>"; };
+ A7386C201619CACB00651424 /* rftreenode.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rftreenode.hpp; sourceTree = "<group>"; };
+ A7386C211619CCE600651424 /* classifysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifysharedcommand.cpp; sourceTree = "<group>"; };
+ A7386C221619CCE600651424 /* classifysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifysharedcommand.h; sourceTree = "<group>"; };
+ A7386C241619E52200651424 /* abstractdecisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = abstractdecisiontree.cpp; sourceTree = "<group>"; };
+ A7386C28161A110700651424 /* decisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = decisiontree.cpp; sourceTree = "<group>"; };
+ A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = loadlogfilecommand.h; sourceTree = "<group>"; };
+ A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = loadlogfilecommand.cpp; sourceTree = "<group>"; };
+ A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clearmemorycommand.h; sourceTree = "<group>"; };
+ A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearmemorycommand.cpp; sourceTree = "<group>"; };
+ A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurmetastats.h; sourceTree = "<group>"; };
+ A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurmetastats.cpp; sourceTree = "<group>"; };
+ A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencecountparser.cpp; sourceTree = "<group>"; };
+ A741FAD415D168A00067BCC5 /* sequencecountparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencecountparser.h; sourceTree = "<group>"; };
+ A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kruskalwalliscommand.cpp; sourceTree = "<group>"; };
+ A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = kruskalwalliscommand.h; sourceTree = "<group>"; };
+ A74A9A9D148E881E00AB5E3E /* spline.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = spline.h; sourceTree = "<group>"; };
+ A74A9A9E148E881E00AB5E3E /* spline.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = spline.cpp; sourceTree = "<group>"; };
+ A74C06E616A9C097008390A3 /* primerdesigncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = primerdesigncommand.h; sourceTree = "<group>"; };
+ A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = primerdesigncommand.cpp; sourceTree = "<group>"; };
+ A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerauchimecommand.h; sourceTree = "<group>"; };
+ A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerauchimecommand.cpp; sourceTree = "<group>"; };
+ A74D59A3159A1E2000043046 /* counttable.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = counttable.cpp; sourceTree = "<group>"; };
+ A74D59A6159A1E3600043046 /* counttable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = counttable.h; sourceTree = "<group>"; };
+ A754149514840CF7005850D1 /* summaryqualcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summaryqualcommand.h; sourceTree = "<group>"; };
+ A754149614840CF7005850D1 /* summaryqualcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summaryqualcommand.cpp; sourceTree = "<group>"; };
+ A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = getmetacommunitycommand.h; sourceTree = "<group>"; };
+ A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getmetacommunitycommand.cpp; sourceTree = "<group>"; };
+ A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qFinderDMM.cpp; sourceTree = "<group>"; };
+ A7548FAF171440ED00B1F05A /* qFinderDMM.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qFinderDMM.h; sourceTree = "<group>"; };
+ A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = homovacommand.h; sourceTree = "<group>"; };
+ A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = homovacommand.cpp; sourceTree = "<group>"; };
+ A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcrseqscommand.h; sourceTree = "<group>"; };
+ A76CDD811510F143004C8458 /* prcseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = prcseqscommand.cpp; sourceTree = "<group>"; };
+ A7730EFD13967241007433A3 /* countseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = countseqscommand.h; sourceTree = "<group>"; };
+ A7730EFE13967241007433A3 /* countseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = countseqscommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A774101214695AF60098E6AC /* shhhseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shhhseqscommand.h; sourceTree = "<group>"; };
+ A774101314695AF60098E6AC /* shhhseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shhhseqscommand.cpp; sourceTree = "<group>"; };
+ A774104614696F320098E6AC /* myseqdist.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = myseqdist.cpp; sourceTree = "<group>"; };
+ A774104714696F320098E6AC /* myseqdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = myseqdist.h; sourceTree = "<group>"; };
+ A77410F414697C300098E6AC /* seqnoise.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqnoise.cpp; sourceTree = "<group>"; };
+ A77410F514697C300098E6AC /* seqnoise.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqnoise.h; sourceTree = "<group>"; };
+ A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcommandinfocommand.h; sourceTree = "<group>"; };
+ A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcommandinfocommand.cpp; sourceTree = "<group>"; };
+ A77A221D139001B600B0BE70 /* deuniquetreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deuniquetreecommand.h; sourceTree = "<group>"; };
+ A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deuniquetreecommand.cpp; sourceTree = "<group>"; };
+ A77B7183173D222F002163C2 /* sparcccommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = sparcccommand.h; sourceTree = "<group>"; };
+ A77B7184173D2240002163C2 /* sparcccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparcccommand.cpp; sourceTree = "<group>"; };
+ A77B7186173D4041002163C2 /* randomnumber.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = randomnumber.cpp; sourceTree = "<group>"; };
+ A77B7187173D4041002163C2 /* randomnumber.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = randomnumber.h; sourceTree = "<group>"; };
+ A77B7189173D40E4002163C2 /* calcsparcc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calcsparcc.cpp; sourceTree = "<group>"; };
+ A77B718A173D40E4002163C2 /* calcsparcc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calcsparcc.h; sourceTree = "<group>"; };
+ A77E1937161B201E00DB1A2A /* randomforest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = randomforest.cpp; sourceTree = "<group>"; };
+ A77E193A161B289600DB1A2A /* rftreenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rftreenode.cpp; sourceTree = "<group>"; };
+ A77EBD2C1523707F00ED407C /* createdatabasecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = createdatabasecommand.h; sourceTree = "<group>"; };
+ A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = createdatabasecommand.cpp; sourceTree = "<group>"; };
+ A7876A25152A017C00A0AE86 /* subsample.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = subsample.cpp; sourceTree = "<group>"; };
+ A7876A28152A018B00A0AE86 /* subsample.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = subsample.h; sourceTree = "<group>"; };
+ A79234D513C74BF6002B08E2 /* mothurfisher.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurfisher.h; sourceTree = "<group>"; };
+ A79234D613C74BF6002B08E2 /* mothurfisher.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurfisher.cpp; sourceTree = "<group>"; };
+ A795840B13F13CD900F201D5 /* countgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = countgroupscommand.h; sourceTree = "<group>"; };
+ A795840C13F13CD900F201D5 /* countgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = countgroupscommand.cpp; sourceTree = "<group>"; };
+ A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergetaxsummarycommand.h; sourceTree = "<group>"; };
+ A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergetaxsummarycommand.cpp; sourceTree = "<group>"; };
+ A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makefastqcommand.h; sourceTree = "<group>"; };
+ A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = "<group>"; };
+ A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filtersharedcommand.cpp; sourceTree = "<group>"; };
+ A79EEF8816971D640006DEC1 /* filtersharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filtersharedcommand.h; sourceTree = "<group>"; };
+ A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listotulabelscommand.cpp; sourceTree = "<group>"; };
+ A7A0671C156294810095C8C5 /* listotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = listotulabelscommand.h; sourceTree = "<group>"; };
+ A7A0671D1562AC230095C8C5 /* makecontigscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makecontigscommand.h; sourceTree = "<group>"; };
+ A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makecontigscommand.cpp; sourceTree = "<group>"; };
+ A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sortseqscommand.cpp; sourceTree = "<group>"; };
+ A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sortseqscommand.h; sourceTree = "<group>"; };
+ A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuassociationcommand.cpp; sourceTree = "<group>"; };
+ A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = otuassociationcommand.h; sourceTree = "<group>"; };
A7A61F1A130035C800E05B6B /* LICENSE */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = LICENSE; sourceTree = "<group>"; };
- A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = amovacommand.h; path = source/amovacommand.h; sourceTree = "<group>"; };
- A7A61F2C130062E000E05B6B /* amovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = amovacommand.cpp; path = source/amovacommand.cpp; sourceTree = "<group>"; };
- A7AACFBA132FE008003D6C4D /* currentfile.h */ = {isa = PBXFileReference; fileEncoding = 4; name = currentfile.h; path = source/currentfile.h; sourceTree = "<group>"; };
- A7BF221214587886000AD524 /* myPerseus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = myPerseus.cpp; path = source/myPerseus.cpp; sourceTree = "<group>"; };
- A7BF221314587886000AD524 /* myPerseus.h */ = {isa = PBXFileReference; fileEncoding = 4; name = myPerseus.h; path = source/myPerseus.h; sourceTree = "<group>"; };
- A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraperseuscommand.h; path = source/chimeraperseuscommand.h; sourceTree = "<group>"; };
- A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraperseuscommand.cpp; path = source/chimeraperseuscommand.cpp; sourceTree = "<group>"; };
- A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = cooccurrencecommand.cpp; path = source/cooccurrencecommand.cpp; sourceTree = "<group>"; };
- A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = cooccurrencecommand.h; path = source/cooccurrencecommand.h; sourceTree = "<group>"; };
- A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = trialSwap2.cpp; path = source/trialSwap2.cpp; sourceTree = "<group>"; };
- A7C3DC0E14FE469500FE1924 /* trialswap2.h */ = {isa = PBXFileReference; fileEncoding = 4; name = trialswap2.h; path = source/trialswap2.h; sourceTree = "<group>"; };
- A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; name = treereader.h; path = source/treereader.h; sourceTree = "<group>"; };
- A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = treereader.cpp; path = source/treereader.cpp; sourceTree = "<group>"; };
- A7DAAFA3133A254E003956EB /* commandparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; name = commandparameter.h; path = source/commandparameter.h; sourceTree = "<group>"; };
- A7E9B64F12D37EC300DA6239 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = ace.cpp; path = source/ace.cpp; sourceTree = "<group>"; };
- A7E9B65012D37EC300DA6239 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; name = ace.h; path = source/ace.h; sourceTree = "<group>"; };
- A7E9B65112D37EC300DA6239 /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = aligncommand.cpp; path = source/aligncommand.cpp; sourceTree = "<group>"; };
- A7E9B65212D37EC300DA6239 /* aligncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = aligncommand.h; path = source/aligncommand.h; sourceTree = "<group>"; };
- A7E9B65312D37EC300DA6239 /* alignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = alignment.cpp; path = source/alignment.cpp; sourceTree = "<group>"; };
- A7E9B65412D37EC300DA6239 /* alignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = alignment.hpp; path = source/alignment.hpp; sourceTree = "<group>"; };
- A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = alignmentcell.cpp; path = source/alignmentcell.cpp; sourceTree = "<group>"; };
- A7E9B65612D37EC300DA6239 /* alignmentcell.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = alignmentcell.hpp; path = source/alignmentcell.hpp; sourceTree = "<group>"; };
- A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = alignmentdb.cpp; path = source/alignmentdb.cpp; sourceTree = "<group>"; };
- A7E9B65812D37EC300DA6239 /* alignmentdb.h */ = {isa = PBXFileReference; fileEncoding = 4; name = alignmentdb.h; path = source/alignmentdb.h; sourceTree = "<group>"; };
- A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = averagelinkage.cpp; path = source/averagelinkage.cpp; sourceTree = "<group>"; };
- A7E9B65A12D37EC300DA6239 /* bayesian.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bayesian.cpp; path = source/bayesian.cpp; sourceTree = "<group>"; };
- A7E9B65B12D37EC300DA6239 /* bayesian.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bayesian.h; path = source/bayesian.h; sourceTree = "<group>"; };
- A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bellerophon.cpp; path = source/bellerophon.cpp; sourceTree = "<group>"; };
- A7E9B65D12D37EC300DA6239 /* bellerophon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bellerophon.h; path = source/bellerophon.h; sourceTree = "<group>"; };
- A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = bergerparker.cpp; path = source/bergerparker.cpp; sourceTree = "<group>"; };
- A7E9B65F12D37EC300DA6239 /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; name = bergerparker.h; path = source/bergerparker.h; sourceTree = "<group>"; };
- A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = binsequencecommand.cpp; path = source/binsequencecommand.cpp; sourceTree = "<group>"; };
- A7E9B66112D37EC300DA6239 /* binsequencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = binsequencecommand.h; path = source/binsequencecommand.h; sourceTree = "<group>"; };
- A7E9B66212D37EC300DA6239 /* blastalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = blastalign.cpp; path = source/blastalign.cpp; sourceTree = "<group>"; };
- A7E9B66312D37EC400DA6239 /* blastalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = blastalign.hpp; path = source/blastalign.hpp; sourceTree = "<group>"; };
- A7E9B66412D37EC400DA6239 /* blastdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = blastdb.cpp; path = source/blastdb.cpp; sourceTree = "<group>"; };
- A7E9B66512D37EC400DA6239 /* blastdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = blastdb.hpp; path = source/blastdb.hpp; sourceTree = "<group>"; };
- A7E9B66612D37EC400DA6239 /* boneh.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = boneh.cpp; path = source/boneh.cpp; sourceTree = "<group>"; };
- A7E9B66712D37EC400DA6239 /* boneh.h */ = {isa = PBXFileReference; fileEncoding = 4; name = boneh.h; path = source/boneh.h; sourceTree = "<group>"; };
- A7E9B66812D37EC400DA6239 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = bootstrap.cpp; path = source/bootstrap.cpp; sourceTree = "<group>"; };
- A7E9B66912D37EC400DA6239 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; name = bootstrap.h; path = source/bootstrap.h; sourceTree = "<group>"; };
- A7E9B66C12D37EC400DA6239 /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = bstick.cpp; path = source/bstick.cpp; sourceTree = "<group>"; };
- A7E9B66D12D37EC400DA6239 /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; name = bstick.h; path = source/bstick.h; sourceTree = "<group>"; };
- A7E9B66E12D37EC400DA6239 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = calculator.cpp; path = source/calculator.cpp; sourceTree = "<group>"; };
- A7E9B66F12D37EC400DA6239 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; name = calculator.h; path = source/calculator.h; sourceTree = "<group>"; };
- A7E9B67012D37EC400DA6239 /* canberra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = canberra.cpp; path = source/canberra.cpp; sourceTree = "<group>"; };
- A7E9B67112D37EC400DA6239 /* canberra.h */ = {isa = PBXFileReference; fileEncoding = 4; name = canberra.h; path = source/canberra.h; sourceTree = "<group>"; };
- A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = catchallcommand.cpp; path = source/catchallcommand.cpp; sourceTree = "<group>"; };
- A7E9B67312D37EC400DA6239 /* catchallcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = catchallcommand.h; path = source/catchallcommand.h; sourceTree = "<group>"; };
- A7E9B67412D37EC400DA6239 /* ccode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = ccode.cpp; path = source/ccode.cpp; sourceTree = "<group>"; };
- A7E9B67512D37EC400DA6239 /* ccode.h */ = {isa = PBXFileReference; fileEncoding = 4; name = ccode.h; path = source/ccode.h; sourceTree = "<group>"; };
- A7E9B67612D37EC400DA6239 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chao1.cpp; path = source/chao1.cpp; sourceTree = "<group>"; };
- A7E9B67712D37EC400DA6239 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chao1.h; path = source/chao1.h; sourceTree = "<group>"; };
- A7E9B67812D37EC400DA6239 /* chimera.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimera.cpp; path = source/chimera.cpp; sourceTree = "<group>"; };
- A7E9B67912D37EC400DA6239 /* chimera.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimera.h; path = source/chimera.h; sourceTree = "<group>"; };
- A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerabellerophoncommand.cpp; path = source/chimerabellerophoncommand.cpp; sourceTree = "<group>"; };
- A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerabellerophoncommand.h; path = source/chimerabellerophoncommand.h; sourceTree = "<group>"; };
- A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraccodecommand.cpp; path = source/chimeraccodecommand.cpp; sourceTree = "<group>"; };
- A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraccodecommand.h; path = source/chimeraccodecommand.h; sourceTree = "<group>"; };
- A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeracheckcommand.cpp; path = source/chimeracheckcommand.cpp; sourceTree = "<group>"; };
- A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeracheckcommand.h; path = source/chimeracheckcommand.h; sourceTree = "<group>"; };
- A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeracheckrdp.cpp; path = source/chimeracheckrdp.cpp; sourceTree = "<group>"; };
- A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeracheckrdp.h; path = source/chimeracheckrdp.h; sourceTree = "<group>"; };
- A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerapintailcommand.cpp; path = source/chimerapintailcommand.cpp; sourceTree = "<group>"; };
- A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerapintailcommand.h; path = source/chimerapintailcommand.h; sourceTree = "<group>"; };
- A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerarealigner.cpp; path = source/chimerarealigner.cpp; sourceTree = "<group>"; };
- A7E9B68512D37EC400DA6239 /* chimerarealigner.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimerarealigner.h; path = source/chimerarealigner.h; sourceTree = "<group>"; };
- A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraslayer.cpp; path = source/chimeraslayer.cpp; sourceTree = "<group>"; };
- A7E9B68912D37EC400DA6239 /* chimeraslayer.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraslayer.h; path = source/chimeraslayer.h; sourceTree = "<group>"; };
- A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraslayercommand.cpp; path = source/chimeraslayercommand.cpp; sourceTree = "<group>"; };
- A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chimeraslayercommand.h; path = source/chimeraslayercommand.h; sourceTree = "<group>"; };
- A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = chopseqscommand.cpp; path = source/chopseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = chopseqscommand.h; path = source/chopseqscommand.h; sourceTree = "<group>"; };
- A7E9B68E12D37EC400DA6239 /* classify.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = classify.cpp; path = source/classify.cpp; sourceTree = "<group>"; };
- A7E9B68F12D37EC400DA6239 /* classify.h */ = {isa = PBXFileReference; fileEncoding = 4; name = classify.h; path = source/classify.h; sourceTree = "<group>"; };
- A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = classifyotucommand.cpp; path = source/classifyotucommand.cpp; sourceTree = "<group>"; };
- A7E9B69112D37EC400DA6239 /* classifyotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = classifyotucommand.h; path = source/classifyotucommand.h; sourceTree = "<group>"; };
- A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = classifyseqscommand.cpp; path = source/classifyseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = classifyseqscommand.h; path = source/classifyseqscommand.h; sourceTree = "<group>"; };
- A7E9B69412D37EC400DA6239 /* clearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clearcut.cpp; path = source/clearcut.cpp; sourceTree = "<group>"; };
- A7E9B69512D37EC400DA6239 /* clearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clearcut.h; path = source/clearcut.h; sourceTree = "<group>"; };
- A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clearcutcommand.cpp; path = source/clearcutcommand.cpp; sourceTree = "<group>"; };
- A7E9B69712D37EC400DA6239 /* clearcutcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clearcutcommand.h; path = source/clearcutcommand.h; sourceTree = "<group>"; };
- A7E9B69812D37EC400DA6239 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = cluster.cpp; path = source/cluster.cpp; sourceTree = "<group>"; };
- A7E9B69912D37EC400DA6239 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = cluster.hpp; path = source/cluster.hpp; sourceTree = "<group>"; };
- A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clusterclassic.cpp; path = source/clusterclassic.cpp; sourceTree = "<group>"; };
- A7E9B69B12D37EC400DA6239 /* clusterclassic.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clusterclassic.h; path = source/clusterclassic.h; sourceTree = "<group>"; };
- A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clustercommand.cpp; path = source/clustercommand.cpp; sourceTree = "<group>"; };
- A7E9B69D12D37EC400DA6239 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clustercommand.h; path = source/clustercommand.h; sourceTree = "<group>"; };
- A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clusterdoturcommand.cpp; path = source/clusterdoturcommand.cpp; sourceTree = "<group>"; };
- A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clusterdoturcommand.h; path = source/clusterdoturcommand.h; sourceTree = "<group>"; };
- A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clusterfragmentscommand.cpp; path = source/clusterfragmentscommand.cpp; sourceTree = "<group>"; };
- A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clusterfragmentscommand.h; path = source/clusterfragmentscommand.h; sourceTree = "<group>"; };
- A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = clustersplitcommand.cpp; path = source/clustersplitcommand.cpp; sourceTree = "<group>"; };
- A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = clustersplitcommand.h; path = source/clustersplitcommand.h; sourceTree = "<group>"; };
- A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = cmdargs.cpp; path = source/cmdargs.cpp; sourceTree = "<group>"; };
- A7E9B6A512D37EC400DA6239 /* cmdargs.h */ = {isa = PBXFileReference; fileEncoding = 4; name = cmdargs.h; path = source/cmdargs.h; sourceTree = "<group>"; };
- A7E9B6A612D37EC400DA6239 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = collect.cpp; path = source/collect.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6A712D37EC400DA6239 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = collect.h; path = source/collect.h; sourceTree = SOURCE_ROOT; };
- A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = collectcommand.cpp; path = source/collectcommand.cpp; sourceTree = "<group>"; };
- A7E9B6A912D37EC400DA6239 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = collectcommand.h; path = source/collectcommand.h; sourceTree = "<group>"; };
- A7E9B6AA12D37EC400DA6239 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; name = collectdisplay.h; path = source/collectdisplay.h; sourceTree = SOURCE_ROOT; };
- A7E9B6AB12D37EC400DA6239 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; name = collectorscurvedata.h; path = source/collectorscurvedata.h; sourceTree = SOURCE_ROOT; };
- A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = collectsharedcommand.cpp; path = source/collectsharedcommand.cpp; sourceTree = "<group>"; };
- A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = collectsharedcommand.h; path = source/collectsharedcommand.h; sourceTree = "<group>"; };
- A7E9B6AE12D37EC400DA6239 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = command.hpp; path = source/command.hpp; sourceTree = "<group>"; };
- A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = commandfactory.cpp; path = source/commandfactory.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6B012D37EC400DA6239 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = commandfactory.hpp; path = source/commandfactory.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = commandoptionparser.cpp; path = source/commandoptionparser.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = commandoptionparser.hpp; path = source/commandoptionparser.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B6B312D37EC400DA6239 /* common.h */ = {isa = PBXFileReference; fileEncoding = 4; name = common.h; path = source/common.h; sourceTree = "<group>"; };
- A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = completelinkage.cpp; path = source/completelinkage.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6B512D37EC400DA6239 /* consensus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = consensus.cpp; path = source/consensus.cpp; sourceTree = "<group>"; };
- A7E9B6B612D37EC400DA6239 /* consensus.h */ = {isa = PBXFileReference; fileEncoding = 4; name = consensus.h; path = source/consensus.h; sourceTree = "<group>"; };
- A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = consensusseqscommand.cpp; path = source/consensusseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = consensusseqscommand.h; path = source/consensusseqscommand.h; sourceTree = "<group>"; };
- A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = corraxescommand.cpp; path = source/corraxescommand.cpp; sourceTree = "<group>"; };
- A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = corraxescommand.h; path = source/corraxescommand.h; sourceTree = "<group>"; };
- A7E9B6BB12D37EC400DA6239 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = coverage.cpp; path = source/coverage.cpp; sourceTree = "<group>"; };
- A7E9B6BC12D37EC400DA6239 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; name = coverage.h; path = source/coverage.h; sourceTree = "<group>"; };
- A7E9B6BD12D37EC400DA6239 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = database.cpp; path = source/database.cpp; sourceTree = "<group>"; };
- A7E9B6BE12D37EC400DA6239 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = database.hpp; path = source/database.hpp; sourceTree = "<group>"; };
- A7E9B6BF12D37EC400DA6239 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = datavector.hpp; path = source/datavector.hpp; sourceTree = "<group>"; };
- A7E9B6C012D37EC400DA6239 /* dayhoff.h */ = {isa = PBXFileReference; fileEncoding = 4; name = dayhoff.h; path = source/dayhoff.h; sourceTree = "<group>"; };
- A7E9B6C112D37EC400DA6239 /* decalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = decalc.cpp; path = source/decalc.cpp; sourceTree = "<group>"; };
- A7E9B6C212D37EC400DA6239 /* decalc.h */ = {isa = PBXFileReference; fileEncoding = 4; name = decalc.h; path = source/decalc.h; sourceTree = "<group>"; };
- A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = deconvolutecommand.cpp; path = source/deconvolutecommand.cpp; sourceTree = "<group>"; };
- A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = deconvolutecommand.h; path = source/deconvolutecommand.h; sourceTree = "<group>"; };
- A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = degapseqscommand.cpp; path = source/degapseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = degapseqscommand.h; path = source/degapseqscommand.h; sourceTree = "<group>"; };
- A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = deuniqueseqscommand.cpp; path = source/deuniqueseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = deuniqueseqscommand.h; path = source/deuniqueseqscommand.h; sourceTree = "<group>"; };
- A7E9B6C912D37EC400DA6239 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; name = display.h; path = source/display.h; sourceTree = SOURCE_ROOT; };
- A7E9B6CA12D37EC400DA6239 /* dist.h */ = {isa = PBXFileReference; fileEncoding = 4; name = dist.h; path = source/dist.h; sourceTree = "<group>"; };
- A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = distancecommand.cpp; path = source/distancecommand.cpp; sourceTree = "<group>"; };
- A7E9B6CC12D37EC400DA6239 /* distancecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = distancecommand.h; path = source/distancecommand.h; sourceTree = "<group>"; };
- A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = distancedb.cpp; path = source/distancedb.cpp; sourceTree = "<group>"; };
- A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = distancedb.hpp; path = source/distancedb.hpp; sourceTree = "<group>"; };
- A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = distclearcut.cpp; path = source/distclearcut.cpp; sourceTree = "<group>"; };
- A7E9B6D012D37EC400DA6239 /* distclearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; name = distclearcut.h; path = source/distclearcut.h; sourceTree = "<group>"; };
- A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = dlibshuff.cpp; path = source/dlibshuff.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6D212D37EC400DA6239 /* dlibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; name = dlibshuff.h; path = source/dlibshuff.h; sourceTree = SOURCE_ROOT; };
- A7E9B6D312D37EC400DA6239 /* dmat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = dmat.cpp; path = source/dmat.cpp; sourceTree = "<group>"; };
- A7E9B6D412D37EC400DA6239 /* dmat.h */ = {isa = PBXFileReference; fileEncoding = 4; name = dmat.h; path = source/dmat.h; sourceTree = "<group>"; };
- A7E9B6D512D37EC400DA6239 /* eachgapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; name = eachgapdist.h; path = source/eachgapdist.h; sourceTree = "<group>"; };
- A7E9B6D612D37EC400DA6239 /* eachgapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; name = eachgapignore.h; path = source/eachgapignore.h; sourceTree = "<group>"; };
- A7E9B6D712D37EC400DA6239 /* efron.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = efron.cpp; path = source/efron.cpp; sourceTree = "<group>"; };
- A7E9B6D812D37EC400DA6239 /* efron.h */ = {isa = PBXFileReference; fileEncoding = 4; name = efron.h; path = source/efron.h; sourceTree = "<group>"; };
- A7E9B6D912D37EC400DA6239 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; name = endiannessmacros.h; path = source/endiannessmacros.h; sourceTree = SOURCE_ROOT; };
- A7E9B6DA12D37EC400DA6239 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = engine.cpp; path = source/engine.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6DB12D37EC400DA6239 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = engine.hpp; path = source/engine.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B6DC12D37EC400DA6239 /* fasta.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = fasta.cpp; path = source/fasta.cpp; sourceTree = "<group>"; };
- A7E9B6DD12D37EC400DA6239 /* fasta.h */ = {isa = PBXFileReference; fileEncoding = 4; name = fasta.h; path = source/fasta.h; sourceTree = "<group>"; };
- A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = fastamap.cpp; path = source/fastamap.cpp; sourceTree = "<group>"; };
- A7E9B6DF12D37EC400DA6239 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; name = fastamap.h; path = source/fastamap.h; sourceTree = "<group>"; };
- A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = fileoutput.cpp; path = source/fileoutput.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B6E112D37EC400DA6239 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; name = fileoutput.h; path = source/fileoutput.h; sourceTree = SOURCE_ROOT; };
- A7E9B6E212D37EC400DA6239 /* filters.h */ = {isa = PBXFileReference; fileEncoding = 4; name = filters.h; path = source/filters.h; sourceTree = "<group>"; };
- A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = filterseqscommand.cpp; path = source/filterseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = filterseqscommand.h; path = source/filterseqscommand.h; sourceTree = "<group>"; };
- A7E9B6E712D37EC400DA6239 /* flowdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = flowdata.cpp; path = source/flowdata.cpp; sourceTree = "<group>"; };
- A7E9B6E812D37EC400DA6239 /* flowdata.h */ = {isa = PBXFileReference; fileEncoding = 4; name = flowdata.h; path = source/flowdata.h; sourceTree = "<group>"; };
- A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = formatcolumn.cpp; path = source/formatcolumn.cpp; sourceTree = "<group>"; };
- A7E9B6EA12D37EC400DA6239 /* formatcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = formatcolumn.h; path = source/formatcolumn.h; sourceTree = "<group>"; };
- A7E9B6EB12D37EC400DA6239 /* formatmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; name = formatmatrix.h; path = source/formatmatrix.h; sourceTree = "<group>"; };
- A7E9B6EC12D37EC400DA6239 /* formatphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = formatphylip.cpp; path = source/formatphylip.cpp; sourceTree = "<group>"; };
- A7E9B6ED12D37EC400DA6239 /* formatphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; name = formatphylip.h; path = source/formatphylip.h; sourceTree = "<group>"; };
- A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = fullmatrix.cpp; path = source/fullmatrix.cpp; sourceTree = "<group>"; };
- A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; name = fullmatrix.h; path = source/fullmatrix.h; sourceTree = "<group>"; };
- A7E9B6F012D37EC400DA6239 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = geom.cpp; path = source/geom.cpp; sourceTree = "<group>"; };
- A7E9B6F112D37EC400DA6239 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; name = geom.h; path = source/geom.h; sourceTree = "<group>"; };
- A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getgroupcommand.cpp; path = source/getgroupcommand.cpp; sourceTree = "<group>"; };
- A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getgroupcommand.h; path = source/getgroupcommand.h; sourceTree = "<group>"; };
- A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getgroupscommand.cpp; path = source/getgroupscommand.cpp; sourceTree = "<group>"; };
- A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getgroupscommand.h; path = source/getgroupscommand.h; sourceTree = "<group>"; };
- A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getlabelcommand.cpp; path = source/getlabelcommand.cpp; sourceTree = "<group>"; };
- A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getlabelcommand.h; path = source/getlabelcommand.h; sourceTree = "<group>"; };
- A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getlineagecommand.cpp; path = source/getlineagecommand.cpp; sourceTree = "<group>"; };
- A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getlineagecommand.h; path = source/getlineagecommand.h; sourceTree = "<group>"; };
- A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getlistcountcommand.cpp; path = source/getlistcountcommand.cpp; sourceTree = "<group>"; };
- A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getlistcountcommand.h; path = source/getlistcountcommand.h; sourceTree = "<group>"; };
- A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getopt_long.cpp; path = source/getopt_long.cpp; sourceTree = "<group>"; };
- A7E9B6FD12D37EC400DA6239 /* getopt_long.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getopt_long.h; path = source/getopt_long.h; sourceTree = "<group>"; };
- A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getoturepcommand.cpp; path = source/getoturepcommand.cpp; sourceTree = "<group>"; };
- A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getoturepcommand.h; path = source/getoturepcommand.h; sourceTree = "<group>"; };
- A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getotuscommand.cpp; path = source/getotuscommand.cpp; sourceTree = "<group>"; };
- A7E9B70112D37EC400DA6239 /* getotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getotuscommand.h; path = source/getotuscommand.h; sourceTree = "<group>"; };
- A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getrabundcommand.cpp; path = source/getrabundcommand.cpp; sourceTree = "<group>"; };
- A7E9B70312D37EC400DA6239 /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getrabundcommand.h; path = source/getrabundcommand.h; sourceTree = "<group>"; };
- A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getrelabundcommand.cpp; path = source/getrelabundcommand.cpp; sourceTree = "<group>"; };
- A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getrelabundcommand.h; path = source/getrelabundcommand.h; sourceTree = "<group>"; };
- A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getsabundcommand.cpp; path = source/getsabundcommand.cpp; sourceTree = "<group>"; };
- A7E9B70712D37EC400DA6239 /* getsabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getsabundcommand.h; path = source/getsabundcommand.h; sourceTree = "<group>"; };
- A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getseqscommand.cpp; path = source/getseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B70912D37EC400DA6239 /* getseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getseqscommand.h; path = source/getseqscommand.h; sourceTree = "<group>"; };
- A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getsharedotucommand.cpp; path = source/getsharedotucommand.cpp; sourceTree = "<group>"; };
- A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getsharedotucommand.h; path = source/getsharedotucommand.h; sourceTree = "<group>"; };
- A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = goodscoverage.cpp; path = source/goodscoverage.cpp; sourceTree = "<group>"; };
- A7E9B70F12D37EC400DA6239 /* goodscoverage.h */ = {isa = PBXFileReference; fileEncoding = 4; name = goodscoverage.h; path = source/goodscoverage.h; sourceTree = "<group>"; };
- A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = gotohoverlap.cpp; path = source/gotohoverlap.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B71112D37EC400DA6239 /* gotohoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = gotohoverlap.hpp; path = source/gotohoverlap.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B71212D37EC400DA6239 /* gower.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = gower.cpp; path = source/gower.cpp; sourceTree = "<group>"; };
- A7E9B71312D37EC400DA6239 /* gower.h */ = {isa = PBXFileReference; fileEncoding = 4; name = gower.h; path = source/gower.h; sourceTree = "<group>"; };
- A7E9B71412D37EC400DA6239 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = groupmap.cpp; path = source/groupmap.cpp; sourceTree = "<group>"; };
- A7E9B71512D37EC400DA6239 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; name = groupmap.h; path = source/groupmap.h; sourceTree = "<group>"; };
- A7E9B71612D37EC400DA6239 /* hamming.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = hamming.cpp; path = source/hamming.cpp; sourceTree = "<group>"; };
- A7E9B71712D37EC400DA6239 /* hamming.h */ = {isa = PBXFileReference; fileEncoding = 4; name = hamming.h; path = source/hamming.h; sourceTree = "<group>"; };
- A7E9B71812D37EC400DA6239 /* hcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = hcluster.cpp; path = source/hcluster.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B71912D37EC400DA6239 /* hcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; name = hcluster.h; path = source/hcluster.h; sourceTree = SOURCE_ROOT; };
- A7E9B71A12D37EC400DA6239 /* hclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = hclustercommand.cpp; path = source/hclustercommand.cpp; sourceTree = "<group>"; };
- A7E9B71B12D37EC400DA6239 /* hclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = hclustercommand.h; path = source/hclustercommand.h; sourceTree = "<group>"; };
- A7E9B71C12D37EC400DA6239 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmap.cpp; path = source/heatmap.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B71D12D37EC400DA6239 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmap.h; path = source/heatmap.h; sourceTree = SOURCE_ROOT; };
- A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmapcommand.cpp; path = source/heatmapcommand.cpp; sourceTree = "<group>"; };
- A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmapcommand.h; path = source/heatmapcommand.h; sourceTree = "<group>"; };
- A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmapsim.cpp; path = source/heatmapsim.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B72112D37EC400DA6239 /* heatmapsim.h */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmapsim.h; path = source/heatmapsim.h; sourceTree = SOURCE_ROOT; };
- A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmapsimcommand.cpp; path = source/heatmapsimcommand.cpp; sourceTree = "<group>"; };
- A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = heatmapsimcommand.h; path = source/heatmapsimcommand.h; sourceTree = "<group>"; };
- A7E9B72412D37EC400DA6239 /* heip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = heip.cpp; path = source/heip.cpp; sourceTree = "<group>"; };
- A7E9B72512D37EC400DA6239 /* heip.h */ = {isa = PBXFileReference; fileEncoding = 4; name = heip.h; path = source/heip.h; sourceTree = "<group>"; };
- A7E9B72612D37EC400DA6239 /* hellinger.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = hellinger.cpp; path = source/hellinger.cpp; sourceTree = "<group>"; };
- A7E9B72712D37EC400DA6239 /* hellinger.h */ = {isa = PBXFileReference; fileEncoding = 4; name = hellinger.h; path = source/hellinger.h; sourceTree = "<group>"; };
- A7E9B72812D37EC400DA6239 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = helpcommand.cpp; path = source/helpcommand.cpp; sourceTree = "<group>"; };
- A7E9B72912D37EC400DA6239 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = helpcommand.h; path = source/helpcommand.h; sourceTree = "<group>"; };
- A7E9B72A12D37EC400DA6239 /* ignoregaps.h */ = {isa = PBXFileReference; fileEncoding = 4; name = ignoregaps.h; path = source/ignoregaps.h; sourceTree = "<group>"; };
- A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = indicatorcommand.cpp; path = source/indicatorcommand.cpp; sourceTree = "<group>"; };
- A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = indicatorcommand.h; path = source/indicatorcommand.h; sourceTree = "<group>"; };
- A7E9B72D12D37EC400DA6239 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = inputdata.cpp; path = source/inputdata.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B72E12D37EC400DA6239 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; name = inputdata.h; path = source/inputdata.h; sourceTree = SOURCE_ROOT; };
- A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = invsimpson.cpp; path = source/invsimpson.cpp; sourceTree = "<group>"; };
- A7E9B73012D37EC400DA6239 /* invsimpson.h */ = {isa = PBXFileReference; fileEncoding = 4; name = invsimpson.h; path = source/invsimpson.h; sourceTree = "<group>"; };
- A7E9B73112D37EC400DA6239 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = jackknife.cpp; path = source/jackknife.cpp; sourceTree = "<group>"; };
- A7E9B73212D37EC400DA6239 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; name = jackknife.h; path = source/jackknife.h; sourceTree = "<group>"; };
- A7E9B73312D37EC400DA6239 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = kmer.cpp; path = source/kmer.cpp; sourceTree = "<group>"; };
- A7E9B73412D37EC400DA6239 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = kmer.hpp; path = source/kmer.hpp; sourceTree = "<group>"; };
- A7E9B73512D37EC400DA6239 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = kmerdb.cpp; path = source/kmerdb.cpp; sourceTree = "<group>"; };
- A7E9B73612D37EC400DA6239 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = kmerdb.hpp; path = source/kmerdb.hpp; sourceTree = "<group>"; };
- A7E9B73712D37EC400DA6239 /* knn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = knn.cpp; path = source/knn.cpp; sourceTree = "<group>"; };
- A7E9B73812D37EC400DA6239 /* knn.h */ = {isa = PBXFileReference; fileEncoding = 4; name = knn.h; path = source/knn.h; sourceTree = "<group>"; };
- A7E9B73912D37EC400DA6239 /* libshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = libshuff.cpp; path = source/libshuff.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B73A12D37EC400DA6239 /* libshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; name = libshuff.h; path = source/libshuff.h; sourceTree = SOURCE_ROOT; };
- A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = libshuffcommand.cpp; path = source/libshuffcommand.cpp; sourceTree = "<group>"; };
- A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = libshuffcommand.h; path = source/libshuffcommand.h; sourceTree = "<group>"; };
- A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = listseqscommand.cpp; path = source/listseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B73E12D37EC400DA6239 /* listseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = listseqscommand.h; path = source/listseqscommand.h; sourceTree = "<group>"; };
- A7E9B73F12D37EC400DA6239 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = listvector.cpp; path = source/listvector.cpp; sourceTree = "<group>"; };
- A7E9B74012D37EC400DA6239 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = listvector.hpp; path = source/listvector.hpp; sourceTree = "<group>"; };
- A7E9B74112D37EC400DA6239 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = logsd.cpp; path = source/logsd.cpp; sourceTree = "<group>"; };
- A7E9B74212D37EC400DA6239 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; name = logsd.h; path = source/logsd.h; sourceTree = "<group>"; };
- A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = makegroupcommand.cpp; path = source/makegroupcommand.cpp; sourceTree = "<group>"; };
- A7E9B74412D37EC400DA6239 /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = makegroupcommand.h; path = source/makegroupcommand.h; sourceTree = "<group>"; };
- A7E9B74512D37EC400DA6239 /* maligner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = maligner.cpp; path = source/maligner.cpp; sourceTree = "<group>"; };
- A7E9B74612D37EC400DA6239 /* maligner.h */ = {isa = PBXFileReference; fileEncoding = 4; name = maligner.h; path = source/maligner.h; sourceTree = "<group>"; };
- A7E9B74712D37EC400DA6239 /* manhattan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = manhattan.cpp; path = source/manhattan.cpp; sourceTree = "<group>"; };
- A7E9B74812D37EC400DA6239 /* manhattan.h */ = {isa = PBXFileReference; fileEncoding = 4; name = manhattan.h; path = source/manhattan.h; sourceTree = "<group>"; };
- A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = matrixoutputcommand.cpp; path = source/matrixoutputcommand.cpp; sourceTree = "<group>"; };
- A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = matrixoutputcommand.h; path = source/matrixoutputcommand.h; sourceTree = "<group>"; };
- A7E9B74B12D37EC400DA6239 /* memchi2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = memchi2.cpp; path = source/memchi2.cpp; sourceTree = "<group>"; };
- A7E9B74C12D37EC400DA6239 /* memchi2.h */ = {isa = PBXFileReference; fileEncoding = 4; name = memchi2.h; path = source/memchi2.h; sourceTree = "<group>"; };
- A7E9B74D12D37EC400DA6239 /* memchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = memchord.cpp; path = source/memchord.cpp; sourceTree = "<group>"; };
- A7E9B74E12D37EC400DA6239 /* memchord.h */ = {isa = PBXFileReference; fileEncoding = 4; name = memchord.h; path = source/memchord.h; sourceTree = "<group>"; };
- A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = memeuclidean.cpp; path = source/memeuclidean.cpp; sourceTree = "<group>"; };
- A7E9B75012D37EC400DA6239 /* memeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; name = memeuclidean.h; path = source/memeuclidean.h; sourceTree = "<group>"; };
- A7E9B75112D37EC400DA6239 /* mempearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mempearson.cpp; path = source/mempearson.cpp; sourceTree = "<group>"; };
- A7E9B75212D37EC400DA6239 /* mempearson.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mempearson.h; path = source/mempearson.h; sourceTree = "<group>"; };
- A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mergefilecommand.cpp; path = source/mergefilecommand.cpp; sourceTree = "<group>"; };
- A7E9B75412D37EC400DA6239 /* mergefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mergefilecommand.h; path = source/mergefilecommand.h; sourceTree = "<group>"; };
- A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = metastatscommand.cpp; path = source/metastatscommand.cpp; sourceTree = "<group>"; };
- A7E9B75812D37EC400DA6239 /* metastatscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = metastatscommand.h; path = source/metastatscommand.h; sourceTree = "<group>"; };
- A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mgclustercommand.cpp; path = source/mgclustercommand.cpp; sourceTree = "<group>"; };
- A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mgclustercommand.h; path = source/mgclustercommand.h; sourceTree = "<group>"; };
- A7E9B75B12D37EC400DA6239 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mothur.cpp; path = source/mothur.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B75C12D37EC400DA6239 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mothur.h; path = source/mothur.h; sourceTree = SOURCE_ROOT; };
- A7E9B75D12D37EC400DA6239 /* mothurout.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mothurout.cpp; path = source/mothurout.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B75E12D37EC400DA6239 /* mothurout.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mothurout.h; path = source/mothurout.h; sourceTree = SOURCE_ROOT; };
- A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nameassignment.cpp; path = source/nameassignment.cpp; sourceTree = "<group>"; };
- A7E9B76012D37EC400DA6239 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nameassignment.hpp; path = source/nameassignment.hpp; sourceTree = "<group>"; };
- A7E9B76112D37EC400DA6239 /* nast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nast.cpp; path = source/nast.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B76212D37EC400DA6239 /* nast.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nast.hpp; path = source/nast.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B76312D37EC400DA6239 /* nastreport.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nastreport.cpp; path = source/nastreport.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B76412D37EC400DA6239 /* nastreport.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nastreport.hpp; path = source/nastreport.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = needlemanoverlap.cpp; path = source/needlemanoverlap.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B76612D37EC400DA6239 /* needlemanoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = needlemanoverlap.hpp; path = source/needlemanoverlap.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B76712D37EC400DA6239 /* noalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = noalign.cpp; path = source/noalign.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B76812D37EC400DA6239 /* noalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = noalign.hpp; path = source/noalign.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B76912D37EC400DA6239 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = nocommands.cpp; path = source/nocommands.cpp; sourceTree = "<group>"; };
- A7E9B76A12D37EC400DA6239 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; name = nocommands.h; path = source/nocommands.h; sourceTree = "<group>"; };
- A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = normalizesharedcommand.cpp; path = source/normalizesharedcommand.cpp; sourceTree = "<group>"; };
- A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = normalizesharedcommand.h; path = source/normalizesharedcommand.h; sourceTree = "<group>"; };
- A7E9B76D12D37EC400DA6239 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = npshannon.cpp; path = source/npshannon.cpp; sourceTree = "<group>"; };
- A7E9B76E12D37EC400DA6239 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; name = npshannon.h; path = source/npshannon.h; sourceTree = "<group>"; };
- A7E9B76F12D37EC400DA6239 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; name = nseqs.h; path = source/nseqs.h; sourceTree = "<group>"; };
- A7E9B77012D37EC400DA6239 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; name = observable.h; path = source/observable.h; sourceTree = SOURCE_ROOT; };
- A7E9B77112D37EC400DA6239 /* odum.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = odum.cpp; path = source/odum.cpp; sourceTree = "<group>"; };
- A7E9B77212D37EC400DA6239 /* odum.h */ = {isa = PBXFileReference; fileEncoding = 4; name = odum.h; path = source/odum.h; sourceTree = "<group>"; };
- A7E9B77312D37EC400DA6239 /* onegapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; name = onegapdist.h; path = source/onegapdist.h; sourceTree = "<group>"; };
- A7E9B77412D37EC400DA6239 /* onegapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; name = onegapignore.h; path = source/onegapignore.h; sourceTree = "<group>"; };
- A7E9B77512D37EC400DA6239 /* optionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = optionparser.cpp; path = source/optionparser.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B77612D37EC400DA6239 /* optionparser.h */ = {isa = PBXFileReference; fileEncoding = 4; name = optionparser.h; path = source/optionparser.h; sourceTree = SOURCE_ROOT; };
- A7E9B77712D37EC400DA6239 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = ordervector.cpp; path = source/ordervector.cpp; sourceTree = "<group>"; };
- A7E9B77812D37EC400DA6239 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = ordervector.hpp; path = source/ordervector.hpp; sourceTree = "<group>"; };
- A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = otuhierarchycommand.cpp; path = source/otuhierarchycommand.cpp; sourceTree = "<group>"; };
- A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = otuhierarchycommand.h; path = source/otuhierarchycommand.h; sourceTree = "<group>"; };
- A7E9B77B12D37EC400DA6239 /* overlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = overlap.cpp; path = source/overlap.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B77C12D37EC400DA6239 /* overlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = overlap.hpp; path = source/overlap.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = pairwiseseqscommand.cpp; path = source/pairwiseseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = pairwiseseqscommand.h; path = source/pairwiseseqscommand.h; sourceTree = "<group>"; };
- A7E9B77F12D37EC400DA6239 /* parsefastaqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = parsefastaqcommand.cpp; path = source/parsefastaqcommand.cpp; sourceTree = "<group>"; };
- A7E9B78012D37EC400DA6239 /* parsefastaqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = parsefastaqcommand.h; path = source/parsefastaqcommand.h; sourceTree = "<group>"; };
- A7E9B78112D37EC400DA6239 /* parselistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = parselistscommand.cpp; path = source/parselistscommand.cpp; sourceTree = "<group>"; };
- A7E9B78212D37EC400DA6239 /* parselistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = parselistscommand.h; path = source/parselistscommand.h; sourceTree = "<group>"; };
- A7E9B78312D37EC400DA6239 /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = parsimony.cpp; path = source/parsimony.cpp; sourceTree = "<group>"; };
- A7E9B78412D37EC400DA6239 /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; name = parsimony.h; path = source/parsimony.h; sourceTree = "<group>"; };
- A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = parsimonycommand.cpp; path = source/parsimonycommand.cpp; sourceTree = "<group>"; };
- A7E9B78612D37EC400DA6239 /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = parsimonycommand.h; path = source/parsimonycommand.h; sourceTree = "<group>"; };
- A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = pcoacommand.cpp; path = source/pcoacommand.cpp; sourceTree = "<group>"; };
- A7E9B78812D37EC400DA6239 /* pcoacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = pcoacommand.h; path = source/pcoacommand.h; sourceTree = "<group>"; };
- A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = phylodiversitycommand.cpp; path = source/phylodiversitycommand.cpp; sourceTree = "<group>"; };
- A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = phylodiversitycommand.h; path = source/phylodiversitycommand.h; sourceTree = "<group>"; };
- A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = phylosummary.cpp; path = source/phylosummary.cpp; sourceTree = "<group>"; };
- A7E9B78E12D37EC400DA6239 /* phylosummary.h */ = {isa = PBXFileReference; fileEncoding = 4; name = phylosummary.h; path = source/phylosummary.h; sourceTree = "<group>"; };
- A7E9B78F12D37EC400DA6239 /* phylotree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = phylotree.cpp; path = source/phylotree.cpp; sourceTree = "<group>"; };
- A7E9B79012D37EC400DA6239 /* phylotree.h */ = {isa = PBXFileReference; fileEncoding = 4; name = phylotree.h; path = source/phylotree.h; sourceTree = "<group>"; };
- A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = phylotypecommand.cpp; path = source/phylotypecommand.cpp; sourceTree = "<group>"; };
- A7E9B79212D37EC400DA6239 /* phylotypecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = phylotypecommand.h; path = source/phylotypecommand.h; sourceTree = "<group>"; };
- A7E9B79312D37EC400DA6239 /* pintail.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = pintail.cpp; path = source/pintail.cpp; sourceTree = "<group>"; };
- A7E9B79412D37EC400DA6239 /* pintail.h */ = {isa = PBXFileReference; fileEncoding = 4; name = pintail.h; path = source/pintail.h; sourceTree = "<group>"; };
- A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = pipelinepdscommand.cpp; path = source/pipelinepdscommand.cpp; sourceTree = "<group>"; };
- A7E9B79612D37EC400DA6239 /* pipelinepdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = pipelinepdscommand.h; path = source/pipelinepdscommand.h; sourceTree = "<group>"; };
- A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = preclustercommand.cpp; path = source/preclustercommand.cpp; sourceTree = "<group>"; };
- A7E9B79812D37EC400DA6239 /* preclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = preclustercommand.h; path = source/preclustercommand.h; sourceTree = "<group>"; };
- A7E9B79912D37EC400DA6239 /* prng.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = prng.cpp; path = source/prng.cpp; sourceTree = "<group>"; };
- A7E9B79A12D37EC400DA6239 /* prng.h */ = {isa = PBXFileReference; fileEncoding = 4; name = prng.h; path = source/prng.h; sourceTree = "<group>"; };
- A7E9B79B12D37EC400DA6239 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = progress.cpp; path = source/progress.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B79C12D37EC400DA6239 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = progress.hpp; path = source/progress.hpp; sourceTree = SOURCE_ROOT; };
- A7E9B79D12D37EC400DA6239 /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = qstat.cpp; path = source/qstat.cpp; sourceTree = "<group>"; };
- A7E9B79E12D37EC400DA6239 /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; name = qstat.h; path = source/qstat.h; sourceTree = "<group>"; };
- A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = qualityscores.cpp; path = source/qualityscores.cpp; sourceTree = "<group>"; };
- A7E9B7A012D37EC400DA6239 /* qualityscores.h */ = {isa = PBXFileReference; fileEncoding = 4; name = qualityscores.h; path = source/qualityscores.h; sourceTree = "<group>"; };
- A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = quitcommand.cpp; path = source/quitcommand.cpp; sourceTree = "<group>"; };
- A7E9B7A212D37EC400DA6239 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = quitcommand.h; path = source/quitcommand.h; sourceTree = "<group>"; };
- A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = rabundvector.cpp; path = source/rabundvector.cpp; sourceTree = "<group>"; };
- A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = rabundvector.hpp; path = source/rabundvector.hpp; sourceTree = "<group>"; };
- A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = rarecalc.cpp; path = source/rarecalc.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B7A612D37EC400DA6239 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; name = rarecalc.h; path = source/rarecalc.h; sourceTree = SOURCE_ROOT; };
- A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = raredisplay.cpp; path = source/raredisplay.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B7A812D37EC400DA6239 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; name = raredisplay.h; path = source/raredisplay.h; sourceTree = SOURCE_ROOT; };
- A7E9B7A912D37EC400DA6239 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefact.cpp; path = source/rarefact.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B7AA12D37EC400DA6239 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefact.h; path = source/rarefact.h; sourceTree = SOURCE_ROOT; };
- A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefactcommand.cpp; path = source/rarefactcommand.cpp; sourceTree = "<group>"; };
- A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefactcommand.h; path = source/rarefactcommand.h; sourceTree = "<group>"; };
- A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefactioncurvedata.h; path = source/rarefactioncurvedata.h; sourceTree = SOURCE_ROOT; };
- A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefactsharedcommand.cpp; path = source/rarefactsharedcommand.cpp; sourceTree = "<group>"; };
- A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = rarefactsharedcommand.h; path = source/rarefactsharedcommand.h; sourceTree = "<group>"; };
- A7E9B7B012D37EC400DA6239 /* readblast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readblast.cpp; path = source/readblast.cpp; sourceTree = "<group>"; };
- A7E9B7B112D37EC400DA6239 /* readblast.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readblast.h; path = source/readblast.h; sourceTree = "<group>"; };
- A7E9B7B212D37EC400DA6239 /* readcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readcluster.cpp; path = source/readcluster.cpp; sourceTree = "<group>"; };
- A7E9B7B312D37EC400DA6239 /* readcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readcluster.h; path = source/readcluster.h; sourceTree = "<group>"; };
- A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readcolumn.cpp; path = source/readcolumn.cpp; sourceTree = "<group>"; };
- A7E9B7B512D37EC400DA6239 /* readcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readcolumn.h; path = source/readcolumn.h; sourceTree = "<group>"; };
- A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readdistcommand.cpp; path = source/readdistcommand.cpp; sourceTree = "<group>"; };
- A7E9B7B712D37EC400DA6239 /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readdistcommand.h; path = source/readdistcommand.h; sourceTree = "<group>"; };
- A7E9B7B812D37EC400DA6239 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readmatrix.hpp; path = source/readmatrix.hpp; sourceTree = "<group>"; };
- A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readotucommand.cpp; path = source/readotucommand.cpp; sourceTree = "<group>"; };
- A7E9B7BC12D37EC400DA6239 /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readotucommand.h; path = source/readotucommand.h; sourceTree = "<group>"; };
- A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readphylip.cpp; path = source/readphylip.cpp; sourceTree = "<group>"; };
- A7E9B7BE12D37EC400DA6239 /* readphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readphylip.h; path = source/readphylip.h; sourceTree = "<group>"; };
- A7E9B7BF12D37EC400DA6239 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readtree.cpp; path = source/readtree.cpp; sourceTree = "<group>"; };
- A7E9B7C012D37EC400DA6239 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readtree.h; path = source/readtree.h; sourceTree = "<group>"; };
- A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = readtreecommand.cpp; path = source/readtreecommand.cpp; sourceTree = "<group>"; };
- A7E9B7C212D37EC400DA6239 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = readtreecommand.h; path = source/readtreecommand.h; sourceTree = "<group>"; };
- A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = removegroupscommand.cpp; path = source/removegroupscommand.cpp; sourceTree = "<group>"; };
- A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = removegroupscommand.h; path = source/removegroupscommand.h; sourceTree = "<group>"; };
- A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = removelineagecommand.cpp; path = source/removelineagecommand.cpp; sourceTree = "<group>"; };
- A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = removelineagecommand.h; path = source/removelineagecommand.h; sourceTree = "<group>"; };
- A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = removeotuscommand.cpp; path = source/removeotuscommand.cpp; sourceTree = "<group>"; };
- A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = removeotuscommand.h; path = source/removeotuscommand.h; sourceTree = "<group>"; };
- A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = removeseqscommand.cpp; path = source/removeseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = removeseqscommand.h; path = source/removeseqscommand.h; sourceTree = "<group>"; };
- A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = reportfile.cpp; path = source/reportfile.cpp; sourceTree = "<group>"; };
- A7E9B7CC12D37EC400DA6239 /* reportfile.h */ = {isa = PBXFileReference; fileEncoding = 4; name = reportfile.h; path = source/reportfile.h; sourceTree = "<group>"; };
- A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = reversecommand.cpp; path = source/reversecommand.cpp; sourceTree = "<group>"; };
- A7E9B7CE12D37EC400DA6239 /* reversecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = reversecommand.h; path = source/reversecommand.h; sourceTree = "<group>"; };
- A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sabundvector.cpp; path = source/sabundvector.cpp; sourceTree = "<group>"; };
- A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sabundvector.hpp; path = source/sabundvector.hpp; sourceTree = "<group>"; };
- A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = screenseqscommand.cpp; path = source/screenseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = screenseqscommand.h; path = source/screenseqscommand.h; sourceTree = "<group>"; };
- A7E9B7D312D37EC400DA6239 /* secondarystructurecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = secondarystructurecommand.cpp; path = source/secondarystructurecommand.cpp; sourceTree = "<group>"; };
- A7E9B7D412D37EC400DA6239 /* secondarystructurecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = secondarystructurecommand.h; path = source/secondarystructurecommand.h; sourceTree = "<group>"; };
- A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sensspeccommand.cpp; path = source/sensspeccommand.cpp; sourceTree = "<group>"; };
- A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sensspeccommand.h; path = source/sensspeccommand.h; sourceTree = "<group>"; };
- A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = seqerrorcommand.cpp; path = source/seqerrorcommand.cpp; sourceTree = "<group>"; };
- A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = seqerrorcommand.h; path = source/seqerrorcommand.h; sourceTree = "<group>"; };
- A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = seqsummarycommand.cpp; path = source/seqsummarycommand.cpp; sourceTree = "<group>"; };
- A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = seqsummarycommand.h; path = source/seqsummarycommand.h; sourceTree = "<group>"; };
- A7E9B7DB12D37EC400DA6239 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sequence.cpp; path = source/sequence.cpp; sourceTree = "<group>"; };
- A7E9B7DC12D37EC400DA6239 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sequence.hpp; path = source/sequence.hpp; sourceTree = "<group>"; };
- A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sequencedb.cpp; path = source/sequencedb.cpp; sourceTree = "<group>"; };
- A7E9B7DE12D37EC400DA6239 /* sequencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sequencedb.h; path = source/sequencedb.h; sourceTree = "<group>"; };
- A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = setdircommand.cpp; path = source/setdircommand.cpp; sourceTree = "<group>"; };
- A7E9B7E012D37EC400DA6239 /* setdircommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = setdircommand.h; path = source/setdircommand.h; sourceTree = "<group>"; };
- A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = setlogfilecommand.cpp; path = source/setlogfilecommand.cpp; sourceTree = "<group>"; };
- A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = setlogfilecommand.h; path = source/setlogfilecommand.h; sourceTree = "<group>"; };
- A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sffinfocommand.cpp; path = source/sffinfocommand.cpp; sourceTree = "<group>"; };
- A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sffinfocommand.h; path = source/sffinfocommand.h; sourceTree = "<group>"; };
- A7E9B7E512D37EC400DA6239 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = shannon.cpp; path = source/shannon.cpp; sourceTree = "<group>"; };
- A7E9B7E612D37EC400DA6239 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; name = shannon.h; path = source/shannon.h; sourceTree = "<group>"; };
- A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = shannoneven.cpp; path = source/shannoneven.cpp; sourceTree = "<group>"; };
- A7E9B7E812D37EC400DA6239 /* shannoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; name = shannoneven.h; path = source/shannoneven.h; sourceTree = "<group>"; };
- A7E9B7E912D37EC400DA6239 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedace.cpp; path = source/sharedace.cpp; sourceTree = "<group>"; };
- A7E9B7EA12D37EC400DA6239 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedace.h; path = source/sharedace.h; sourceTree = "<group>"; };
- A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedanderbergs.cpp; path = source/sharedanderbergs.cpp; sourceTree = "<group>"; };
- A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedanderbergs.h; path = source/sharedanderbergs.h; sourceTree = "<group>"; };
- A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedbraycurtis.cpp; path = source/sharedbraycurtis.cpp; sourceTree = "<group>"; };
- A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedbraycurtis.h; path = source/sharedbraycurtis.h; sourceTree = "<group>"; };
- A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedchao1.cpp; path = source/sharedchao1.cpp; sourceTree = "<group>"; };
- A7E9B7F112D37EC400DA6239 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedchao1.h; path = source/sharedchao1.h; sourceTree = "<group>"; };
- A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedcommand.cpp; path = source/sharedcommand.cpp; sourceTree = "<group>"; };
- A7E9B7F312D37EC400DA6239 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedcommand.h; path = source/sharedcommand.h; sourceTree = "<group>"; };
- A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjabund.cpp; path = source/sharedjabund.cpp; sourceTree = "<group>"; };
- A7E9B7F512D37EC400DA6239 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjabund.h; path = source/sharedjabund.h; sourceTree = "<group>"; };
- A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjackknife.cpp; path = source/sharedjackknife.cpp; sourceTree = "<group>"; };
- A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjackknife.h; path = source/sharedjackknife.h; sourceTree = "<group>"; };
- A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjclass.cpp; path = source/sharedjclass.cpp; sourceTree = "<group>"; };
- A7E9B7F912D37EC400DA6239 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjclass.h; path = source/sharedjclass.h; sourceTree = "<group>"; };
- A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjest.cpp; path = source/sharedjest.cpp; sourceTree = "<group>"; };
- A7E9B7FB12D37EC400DA6239 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedjest.h; path = source/sharedjest.h; sourceTree = "<group>"; };
- A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedkstest.cpp; path = source/sharedkstest.cpp; sourceTree = "<group>"; };
- A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedkstest.h; path = source/sharedkstest.h; sourceTree = "<group>"; };
- A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedkulczynski.cpp; path = source/sharedkulczynski.cpp; sourceTree = "<group>"; };
- A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedkulczynski.h; path = source/sharedkulczynski.h; sourceTree = "<group>"; };
- A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedkulczynskicody.cpp; path = source/sharedkulczynskicody.cpp; sourceTree = "<group>"; };
- A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedkulczynskicody.h; path = source/sharedkulczynskicody.h; sourceTree = "<group>"; };
- A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedlennon.cpp; path = source/sharedlennon.cpp; sourceTree = "<group>"; };
- A7E9B80312D37EC400DA6239 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedlennon.h; path = source/sharedlennon.h; sourceTree = "<group>"; };
- A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedlistvector.cpp; path = source/sharedlistvector.cpp; sourceTree = "<group>"; };
- A7E9B80512D37EC400DA6239 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedlistvector.h; path = source/sharedlistvector.h; sourceTree = "<group>"; };
- A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedmarczewski.cpp; path = source/sharedmarczewski.cpp; sourceTree = "<group>"; };
- A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedmarczewski.h; path = source/sharedmarczewski.h; sourceTree = "<group>"; };
- A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedmorisitahorn.cpp; path = source/sharedmorisitahorn.cpp; sourceTree = "<group>"; };
- A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedmorisitahorn.h; path = source/sharedmorisitahorn.h; sourceTree = "<group>"; };
- A7E9B80A12D37EC400DA6239 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharednseqs.h; path = source/sharednseqs.h; sourceTree = "<group>"; };
- A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedochiai.cpp; path = source/sharedochiai.cpp; sourceTree = "<group>"; };
- A7E9B80C12D37EC400DA6239 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedochiai.h; path = source/sharedochiai.h; sourceTree = "<group>"; };
- A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedordervector.cpp; path = source/sharedordervector.cpp; sourceTree = "<group>"; };
- A7E9B80E12D37EC400DA6239 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedordervector.h; path = source/sharedordervector.h; sourceTree = "<group>"; };
- A7E9B80F12D37EC400DA6239 /* sharedrabundfloatvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedrabundfloatvector.cpp; path = source/sharedrabundfloatvector.cpp; sourceTree = "<group>"; };
- A7E9B81012D37EC400DA6239 /* sharedrabundfloatvector.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedrabundfloatvector.h; path = source/sharedrabundfloatvector.h; sourceTree = "<group>"; };
- A7E9B81112D37EC400DA6239 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedrabundvector.cpp; path = source/sharedrabundvector.cpp; sourceTree = "<group>"; };
- A7E9B81212D37EC400DA6239 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedrabundvector.h; path = source/sharedrabundvector.h; sourceTree = "<group>"; };
- A7E9B81312D37EC400DA6239 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsabundvector.cpp; path = source/sharedsabundvector.cpp; sourceTree = "<group>"; };
- A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsabundvector.h; path = source/sharedsabundvector.h; sourceTree = "<group>"; };
- A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsobs.cpp; path = source/sharedsobs.cpp; sourceTree = "<group>"; };
- A7E9B81612D37EC400DA6239 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsobs.h; path = source/sharedsobs.h; sourceTree = "<group>"; };
- A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsobscollectsummary.cpp; path = source/sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
- A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsobscollectsummary.h; path = source/sharedsobscollectsummary.h; sourceTree = "<group>"; };
- A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsorabund.cpp; path = source/sharedsorabund.cpp; sourceTree = "<group>"; };
- A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsorabund.h; path = source/sharedsorabund.h; sourceTree = "<group>"; };
- A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsorclass.cpp; path = source/sharedsorclass.cpp; sourceTree = "<group>"; };
- A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsorclass.h; path = source/sharedsorclass.h; sourceTree = "<group>"; };
- A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsorest.cpp; path = source/sharedsorest.cpp; sourceTree = "<group>"; };
- A7E9B81E12D37EC400DA6239 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedsorest.h; path = source/sharedsorest.h; sourceTree = "<group>"; };
- A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedthetan.cpp; path = source/sharedthetan.cpp; sourceTree = "<group>"; };
- A7E9B82012D37EC400DA6239 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedthetan.h; path = source/sharedthetan.h; sourceTree = "<group>"; };
- A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedthetayc.cpp; path = source/sharedthetayc.cpp; sourceTree = "<group>"; };
- A7E9B82212D37EC400DA6239 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedthetayc.h; path = source/sharedthetayc.h; sourceTree = "<group>"; };
- A7E9B82312D37EC400DA6239 /* sharedutilities.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedutilities.cpp; path = source/sharedutilities.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B82412D37EC400DA6239 /* sharedutilities.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sharedutilities.h; path = source/sharedutilities.h; sourceTree = SOURCE_ROOT; };
- A7E9B82512D37EC400DA6239 /* shen.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = shen.cpp; path = source/shen.cpp; sourceTree = "<group>"; };
- A7E9B82612D37EC400DA6239 /* shen.h */ = {isa = PBXFileReference; fileEncoding = 4; name = shen.h; path = source/shen.h; sourceTree = "<group>"; };
- A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = shhhercommand.cpp; path = source/shhhercommand.cpp; sourceTree = "<group>"; };
- A7E9B82812D37EC400DA6239 /* shhhercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = shhhercommand.h; path = source/shhhercommand.h; sourceTree = "<group>"; };
- A7E9B82912D37EC400DA6239 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = simpson.cpp; path = source/simpson.cpp; sourceTree = "<group>"; };
- A7E9B82A12D37EC400DA6239 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; name = simpson.h; path = source/simpson.h; sourceTree = "<group>"; };
- A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = simpsoneven.cpp; path = source/simpsoneven.cpp; sourceTree = "<group>"; };
- A7E9B82C12D37EC400DA6239 /* simpsoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; name = simpsoneven.h; path = source/simpsoneven.h; sourceTree = "<group>"; };
- A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = singlelinkage.cpp; path = source/singlelinkage.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B82E12D37EC400DA6239 /* slayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = slayer.cpp; path = source/slayer.cpp; sourceTree = "<group>"; };
- A7E9B82F12D37EC400DA6239 /* slayer.h */ = {isa = PBXFileReference; fileEncoding = 4; name = slayer.h; path = source/slayer.h; sourceTree = "<group>"; };
- A7E9B83012D37EC400DA6239 /* slibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = slibshuff.cpp; path = source/slibshuff.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B83112D37EC400DA6239 /* slibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; name = slibshuff.h; path = source/slibshuff.h; sourceTree = SOURCE_ROOT; };
- A7E9B83212D37EC400DA6239 /* smithwilson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = smithwilson.cpp; path = source/smithwilson.cpp; sourceTree = "<group>"; };
- A7E9B83312D37EC400DA6239 /* smithwilson.h */ = {isa = PBXFileReference; fileEncoding = 4; name = smithwilson.h; path = source/smithwilson.h; sourceTree = "<group>"; };
- A7E9B83412D37EC400DA6239 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sobs.h; path = source/sobs.h; sourceTree = "<group>"; };
- A7E9B83512D37EC400DA6239 /* soergel.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = soergel.cpp; path = source/soergel.cpp; sourceTree = "<group>"; };
- A7E9B83612D37EC400DA6239 /* soergel.h */ = {isa = PBXFileReference; fileEncoding = 4; name = soergel.h; path = source/soergel.h; sourceTree = "<group>"; };
- A7E9B83712D37EC400DA6239 /* solow.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = solow.cpp; path = source/solow.cpp; sourceTree = "<group>"; };
- A7E9B83812D37EC400DA6239 /* solow.h */ = {isa = PBXFileReference; fileEncoding = 4; name = solow.h; path = source/solow.h; sourceTree = "<group>"; };
- A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sparsematrix.cpp; path = source/sparsematrix.cpp; sourceTree = "<group>"; };
- A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sparsematrix.hpp; path = source/sparsematrix.hpp; sourceTree = "<group>"; };
- A7E9B83B12D37EC400DA6239 /* spearman.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = spearman.cpp; path = source/spearman.cpp; sourceTree = "<group>"; };
- A7E9B83C12D37EC400DA6239 /* spearman.h */ = {isa = PBXFileReference; fileEncoding = 4; name = spearman.h; path = source/spearman.h; sourceTree = "<group>"; };
- A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = speciesprofile.cpp; path = source/speciesprofile.cpp; sourceTree = "<group>"; };
- A7E9B83E12D37EC400DA6239 /* speciesprofile.h */ = {isa = PBXFileReference; fileEncoding = 4; name = speciesprofile.h; path = source/speciesprofile.h; sourceTree = "<group>"; };
- A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = splitabundcommand.cpp; path = source/splitabundcommand.cpp; sourceTree = "<group>"; };
- A7E9B84012D37EC400DA6239 /* splitabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = splitabundcommand.h; path = source/splitabundcommand.h; sourceTree = "<group>"; };
- A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = splitgroupscommand.cpp; path = source/splitgroupscommand.cpp; sourceTree = "<group>"; };
- A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = splitgroupscommand.h; path = source/splitgroupscommand.h; sourceTree = "<group>"; };
- A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = splitmatrix.cpp; path = source/splitmatrix.cpp; sourceTree = "<group>"; };
- A7E9B84412D37EC400DA6239 /* splitmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; name = splitmatrix.h; path = source/splitmatrix.h; sourceTree = "<group>"; };
- A7E9B84512D37EC400DA6239 /* structchi2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = structchi2.cpp; path = source/structchi2.cpp; sourceTree = "<group>"; };
- A7E9B84612D37EC400DA6239 /* structchi2.h */ = {isa = PBXFileReference; fileEncoding = 4; name = structchi2.h; path = source/structchi2.h; sourceTree = "<group>"; };
- A7E9B84712D37EC400DA6239 /* structchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = structchord.cpp; path = source/structchord.cpp; sourceTree = "<group>"; };
- A7E9B84812D37EC400DA6239 /* structchord.h */ = {isa = PBXFileReference; fileEncoding = 4; name = structchord.h; path = source/structchord.h; sourceTree = "<group>"; };
- A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = structeuclidean.cpp; path = source/structeuclidean.cpp; sourceTree = "<group>"; };
- A7E9B84A12D37EC400DA6239 /* structeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; name = structeuclidean.h; path = source/structeuclidean.h; sourceTree = "<group>"; };
- A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = structkulczynski.cpp; path = source/structkulczynski.cpp; sourceTree = "<group>"; };
- A7E9B84C12D37EC400DA6239 /* structkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; name = structkulczynski.h; path = source/structkulczynski.h; sourceTree = "<group>"; };
- A7E9B84D12D37EC400DA6239 /* structpearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = structpearson.cpp; path = source/structpearson.cpp; sourceTree = "<group>"; };
- A7E9B84E12D37EC400DA6239 /* structpearson.h */ = {isa = PBXFileReference; fileEncoding = 4; name = structpearson.h; path = source/structpearson.h; sourceTree = "<group>"; };
- A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = subsamplecommand.cpp; path = source/subsamplecommand.cpp; sourceTree = "<group>"; };
- A7E9B85012D37EC400DA6239 /* subsamplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = subsamplecommand.h; path = source/subsamplecommand.h; sourceTree = "<group>"; };
- A7E9B85112D37EC400DA6239 /* suffixdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = suffixdb.cpp; path = source/suffixdb.cpp; sourceTree = "<group>"; };
- A7E9B85212D37EC400DA6239 /* suffixdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = suffixdb.hpp; path = source/suffixdb.hpp; sourceTree = "<group>"; };
- A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = suffixnodes.cpp; path = source/suffixnodes.cpp; sourceTree = "<group>"; };
- A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = suffixnodes.hpp; path = source/suffixnodes.hpp; sourceTree = "<group>"; };
- A7E9B85512D37EC400DA6239 /* suffixtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = suffixtree.cpp; path = source/suffixtree.cpp; sourceTree = "<group>"; };
- A7E9B85612D37EC400DA6239 /* suffixtree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; name = suffixtree.hpp; path = source/suffixtree.hpp; sourceTree = "<group>"; };
- A7E9B85712D37EC400DA6239 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = summarycommand.cpp; path = source/summarycommand.cpp; sourceTree = "<group>"; };
- A7E9B85812D37EC400DA6239 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = summarycommand.h; path = source/summarycommand.h; sourceTree = "<group>"; };
- A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = summarysharedcommand.cpp; path = source/summarysharedcommand.cpp; sourceTree = "<group>"; };
- A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = summarysharedcommand.h; path = source/summarysharedcommand.h; sourceTree = "<group>"; };
- A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = systemcommand.cpp; path = source/systemcommand.cpp; sourceTree = "<group>"; };
- A7E9B85C12D37EC400DA6239 /* systemcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = systemcommand.h; path = source/systemcommand.h; sourceTree = "<group>"; };
- A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = taxonomyequalizer.cpp; path = source/taxonomyequalizer.cpp; sourceTree = "<group>"; };
- A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */ = {isa = PBXFileReference; fileEncoding = 4; name = taxonomyequalizer.h; path = source/taxonomyequalizer.h; sourceTree = "<group>"; };
- A7E9B85F12D37EC400DA6239 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = tree.cpp; path = source/tree.cpp; sourceTree = "<group>"; };
- A7E9B86012D37EC400DA6239 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; name = tree.h; path = source/tree.h; sourceTree = "<group>"; };
- A7E9B86112D37EC400DA6239 /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; name = treecalculator.h; path = source/treecalculator.h; sourceTree = "<group>"; };
- A7E9B86212D37EC400DA6239 /* treegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = treegroupscommand.cpp; path = source/treegroupscommand.cpp; sourceTree = "<group>"; };
- A7E9B86312D37EC400DA6239 /* treegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = treegroupscommand.h; path = source/treegroupscommand.h; sourceTree = "<group>"; };
- A7E9B86412D37EC400DA6239 /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = treemap.cpp; path = source/treemap.cpp; sourceTree = "<group>"; };
- A7E9B86512D37EC400DA6239 /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; name = treemap.h; path = source/treemap.h; sourceTree = "<group>"; };
- A7E9B86612D37EC400DA6239 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = treenode.cpp; path = source/treenode.cpp; sourceTree = "<group>"; };
- A7E9B86712D37EC400DA6239 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; name = treenode.h; path = source/treenode.h; sourceTree = "<group>"; };
- A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = trimflowscommand.cpp; path = source/trimflowscommand.cpp; sourceTree = "<group>"; };
- A7E9B86912D37EC400DA6239 /* trimflowscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = trimflowscommand.h; path = source/trimflowscommand.h; sourceTree = "<group>"; };
- A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = trimseqscommand.cpp; path = source/trimseqscommand.cpp; sourceTree = "<group>"; };
- A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = trimseqscommand.h; path = source/trimseqscommand.h; sourceTree = "<group>"; };
- A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = unifracunweightedcommand.cpp; path = source/unifracunweightedcommand.cpp; sourceTree = "<group>"; };
- A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = unifracunweightedcommand.h; path = source/unifracunweightedcommand.h; sourceTree = "<group>"; };
- A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = unifracweightedcommand.cpp; path = source/unifracweightedcommand.cpp; sourceTree = "<group>"; };
- A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = unifracweightedcommand.h; path = source/unifracweightedcommand.h; sourceTree = "<group>"; };
- A7E9B87012D37EC400DA6239 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = unweighted.cpp; path = source/unweighted.cpp; sourceTree = "<group>"; };
- A7E9B87112D37EC400DA6239 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; name = unweighted.h; path = source/unweighted.h; sourceTree = "<group>"; };
- A7E9B87212D37EC400DA6239 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = uvest.cpp; path = source/uvest.cpp; sourceTree = "<group>"; };
- A7E9B87312D37EC400DA6239 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; name = uvest.h; path = source/uvest.h; sourceTree = "<group>"; };
- A7E9B87412D37EC400DA6239 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = validcalculator.cpp; path = source/validcalculator.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B87512D37EC400DA6239 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; name = validcalculator.h; path = source/validcalculator.h; sourceTree = SOURCE_ROOT; };
- A7E9B87612D37EC400DA6239 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = validparameter.cpp; path = source/validparameter.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B87712D37EC400DA6239 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; name = validparameter.h; path = source/validparameter.h; sourceTree = SOURCE_ROOT; };
- A7E9B87812D37EC400DA6239 /* venn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = venn.cpp; path = source/venn.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B87912D37EC400DA6239 /* venn.h */ = {isa = PBXFileReference; fileEncoding = 4; name = venn.h; path = source/venn.h; sourceTree = SOURCE_ROOT; };
- A7E9B87A12D37EC400DA6239 /* venncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = venncommand.cpp; path = source/venncommand.cpp; sourceTree = "<group>"; };
- A7E9B87B12D37EC400DA6239 /* venncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = venncommand.h; path = source/venncommand.h; sourceTree = "<group>"; };
- A7E9B87C12D37EC400DA6239 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = weighted.cpp; path = source/weighted.cpp; sourceTree = "<group>"; };
- A7E9B87D12D37EC400DA6239 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; name = weighted.h; path = source/weighted.h; sourceTree = "<group>"; };
- A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = weightedlinkage.cpp; path = source/weightedlinkage.cpp; sourceTree = SOURCE_ROOT; };
- A7E9B87F12D37EC400DA6239 /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = whittaker.cpp; path = source/whittaker.cpp; sourceTree = "<group>"; };
- A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; name = whittaker.h; path = source/whittaker.h; sourceTree = "<group>"; };
- A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = classifytreecommand.cpp; path = source/classifytreecommand.cpp; sourceTree = "<group>"; };
- A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = classifytreecommand.h; path = source/classifytreecommand.h; sourceTree = "<group>"; };
- A7F9F5CD141A5E500032F693 /* sequenceparser.h */ = {isa = PBXFileReference; fileEncoding = 4; name = sequenceparser.h; path = source/sequenceparser.h; sourceTree = "<group>"; };
- A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = sequenceparser.cpp; path = source/sequenceparser.cpp; sourceTree = "<group>"; };
- A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = mantelcommand.h; path = source/mantelcommand.h; sourceTree = "<group>"; };
- A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = mantelcommand.cpp; path = source/mantelcommand.cpp; sourceTree = "<group>"; };
- A7FA2ABC14A0E881007C09A6 /* bsplvb.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = bsplvb.f; path = source/bsplvb.f; sourceTree = "<group>"; };
- A7FA2ABD14A0E881007C09A6 /* bsplvd.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = bsplvd.f; path = source/bsplvd.f; sourceTree = "<group>"; };
- A7FA2ABE14A0E881007C09A6 /* bvalue.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = bvalue.f; path = source/bvalue.f; sourceTree = "<group>"; };
- A7FA2ABF14A0E881007C09A6 /* daxpy.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = daxpy.f; path = source/daxpy.f; sourceTree = "<group>"; };
- A7FA2AC014A0E881007C09A6 /* ddot.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = ddot.f; path = source/ddot.f; sourceTree = "<group>"; };
- A7FA2AC114A0E881007C09A6 /* dpbfa.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = dpbfa.f; path = source/dpbfa.f; sourceTree = "<group>"; };
- A7FA2AC214A0E881007C09A6 /* dpbsl.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = dpbsl.f; path = source/dpbsl.f; sourceTree = "<group>"; };
- A7FA2AC314A0E881007C09A6 /* interv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = interv.f; path = source/interv.f; sourceTree = "<group>"; };
- A7FA2AC414A0E881007C09A6 /* sgram.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = sgram.f; path = source/sgram.f; sourceTree = "<group>"; };
- A7FA2AC514A0E881007C09A6 /* sinerp.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = sinerp.f; path = source/sinerp.f; sourceTree = "<group>"; };
- A7FA2AC614A0E881007C09A6 /* stxwx.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = stxwx.f; path = source/stxwx.f; sourceTree = "<group>"; };
- A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = sslvrg.f; path = source/sslvrg.f; sourceTree = "<group>"; };
- A7FA2B5A14A0F0C2007C09A6 /* intrv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; name = intrv.f; path = source/intrv.f; sourceTree = "<group>"; };
- A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; name = linearalgebra.h; path = source/linearalgebra.h; sourceTree = "<group>"; };
- A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = linearalgebra.cpp; path = source/linearalgebra.cpp; sourceTree = "<group>"; };
- A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = pcacommand.h; path = source/pcacommand.h; sourceTree = "<group>"; };
- A7FC486612D795D60055BC5C /* pcacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = pcacommand.cpp; path = source/pcacommand.cpp; sourceTree = "<group>"; };
- A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = getcurrentcommand.h; path = source/getcurrentcommand.h; sourceTree = "<group>"; };
- A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = getcurrentcommand.cpp; path = source/getcurrentcommand.cpp; sourceTree = "<group>"; };
- A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = setcurrentcommand.h; path = source/setcurrentcommand.h; sourceTree = "<group>"; };
- A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = setcurrentcommand.cpp; path = source/setcurrentcommand.cpp; sourceTree = "<group>"; };
- A7FF19F0140FFDA500AD216D /* trimoligos.h */ = {isa = PBXFileReference; fileEncoding = 4; name = trimoligos.h; path = source/trimoligos.h; sourceTree = "<group>"; };
- A7FF19F1140FFDA500AD216D /* trimoligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = trimoligos.cpp; path = source/trimoligos.cpp; sourceTree = "<group>"; };
- A7FFB556142CA02C004884F2 /* summarytaxcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; name = summarytaxcommand.h; path = source/summarytaxcommand.h; sourceTree = "<group>"; };
- A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; name = summarytaxcommand.cpp; path = source/summarytaxcommand.cpp; sourceTree = "<group>"; };
+ A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = amovacommand.h; sourceTree = "<group>"; };
+ A7A61F2C130062E000E05B6B /* amovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = amovacommand.cpp; sourceTree = "<group>"; };
+ A7AACFBA132FE008003D6C4D /* currentfile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = currentfile.h; sourceTree = "<group>"; };
+ A7B0231416B8244B006BA09E /* removedistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removedistscommand.cpp; sourceTree = "<group>"; };
+ A7B0231716B8245D006BA09E /* removedistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removedistscommand.h; sourceTree = "<group>"; };
+ A7BF221214587886000AD524 /* myPerseus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = myPerseus.cpp; sourceTree = "<group>"; };
+ A7BF221314587886000AD524 /* myPerseus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = myPerseus.h; sourceTree = "<group>"; };
+ A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraperseuscommand.h; sourceTree = "<group>"; };
+ A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraperseuscommand.cpp; sourceTree = "<group>"; };
+ A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cooccurrencecommand.cpp; sourceTree = "<group>"; };
+ A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = cooccurrencecommand.h; sourceTree = "<group>"; };
+ A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trialSwap2.cpp; sourceTree = "<group>"; };
+ A7C3DC0E14FE469500FE1924 /* trialswap2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trialswap2.h; sourceTree = "<group>"; };
+ A7C7DAB615DA75760059B0CF /* sffmultiplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sffmultiplecommand.h; sourceTree = "<group>"; };
+ A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffmultiplecommand.cpp; sourceTree = "<group>"; };
+ A7CFA42F1755400500D9ED4D /* renameseqscommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = renameseqscommand.h; sourceTree = "<group>"; };
+ A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = renameseqscommand.cpp; sourceTree = "<group>"; };
+ A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treereader.h; sourceTree = "<group>"; };
+ A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treereader.cpp; sourceTree = "<group>"; };
+ A7DAAFA3133A254E003956EB /* commandparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = commandparameter.h; sourceTree = "<group>"; };
+ A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsedistancematrix.cpp; sourceTree = "<group>"; };
+ A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sparsedistancematrix.h; sourceTree = "<group>"; };
+ A7E6F69C17427CF2006775E2 /* makelookupcommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = makelookupcommand.h; sourceTree = "<group>"; };
+ A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makelookupcommand.cpp; sourceTree = "<group>"; };
+ A7E9B64F12D37EC300DA6239 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
+ A7E9B65012D37EC300DA6239 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
+ A7E9B65112D37EC300DA6239 /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = "<group>"; };
+ A7E9B65212D37EC300DA6239 /* aligncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = aligncommand.h; sourceTree = "<group>"; };
+ A7E9B65312D37EC300DA6239 /* alignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignment.cpp; sourceTree = "<group>"; };
+ A7E9B65412D37EC300DA6239 /* alignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = alignment.hpp; sourceTree = "<group>"; };
+ A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignmentcell.cpp; sourceTree = "<group>"; };
+ A7E9B65612D37EC300DA6239 /* alignmentcell.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = alignmentcell.hpp; sourceTree = "<group>"; };
+ A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignmentdb.cpp; sourceTree = "<group>"; };
+ A7E9B65812D37EC300DA6239 /* alignmentdb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = alignmentdb.h; sourceTree = "<group>"; };
+ A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B65A12D37EC300DA6239 /* bayesian.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bayesian.cpp; sourceTree = "<group>"; };
+ A7E9B65B12D37EC300DA6239 /* bayesian.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bayesian.h; sourceTree = "<group>"; };
+ A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bellerophon.cpp; sourceTree = "<group>"; };
+ A7E9B65D12D37EC300DA6239 /* bellerophon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bellerophon.h; sourceTree = "<group>"; };
+ A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
+ A7E9B65F12D37EC300DA6239 /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
+ A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = binsequencecommand.cpp; sourceTree = "<group>"; };
+ A7E9B66112D37EC300DA6239 /* binsequencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = binsequencecommand.h; sourceTree = "<group>"; };
+ A7E9B66212D37EC300DA6239 /* blastalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = blastalign.cpp; sourceTree = "<group>"; };
+ A7E9B66312D37EC400DA6239 /* blastalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = blastalign.hpp; sourceTree = "<group>"; };
+ A7E9B66412D37EC400DA6239 /* blastdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = blastdb.cpp; sourceTree = "<group>"; };
+ A7E9B66512D37EC400DA6239 /* blastdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = blastdb.hpp; sourceTree = "<group>"; };
+ A7E9B66612D37EC400DA6239 /* boneh.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = boneh.cpp; sourceTree = "<group>"; };
+ A7E9B66712D37EC400DA6239 /* boneh.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = boneh.h; sourceTree = "<group>"; };
+ A7E9B66812D37EC400DA6239 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
+ A7E9B66912D37EC400DA6239 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
+ A7E9B66C12D37EC400DA6239 /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = "<group>"; };
+ A7E9B66D12D37EC400DA6239 /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
+ A7E9B66E12D37EC400DA6239 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
+ A7E9B66F12D37EC400DA6239 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
+ A7E9B67012D37EC400DA6239 /* canberra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = canberra.cpp; sourceTree = "<group>"; };
+ A7E9B67112D37EC400DA6239 /* canberra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = canberra.h; sourceTree = "<group>"; };
+ A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = catchallcommand.cpp; sourceTree = "<group>"; };
+ A7E9B67312D37EC400DA6239 /* catchallcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = catchallcommand.h; sourceTree = "<group>"; };
+ A7E9B67412D37EC400DA6239 /* ccode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ccode.cpp; sourceTree = "<group>"; };
+ A7E9B67512D37EC400DA6239 /* ccode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ccode.h; sourceTree = "<group>"; };
+ A7E9B67612D37EC400DA6239 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
+ A7E9B67712D37EC400DA6239 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
+ A7E9B67812D37EC400DA6239 /* chimera.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimera.cpp; sourceTree = "<group>"; };
+ A7E9B67912D37EC400DA6239 /* chimera.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimera.h; sourceTree = "<group>"; };
+ A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerabellerophoncommand.cpp; sourceTree = "<group>"; };
+ A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerabellerophoncommand.h; sourceTree = "<group>"; };
+ A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraccodecommand.cpp; sourceTree = "<group>"; };
+ A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraccodecommand.h; sourceTree = "<group>"; };
+ A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckcommand.cpp; sourceTree = "<group>"; };
+ A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckcommand.h; sourceTree = "<group>"; };
+ A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckrdp.cpp; sourceTree = "<group>"; };
+ A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckrdp.h; sourceTree = "<group>"; };
+ A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerapintailcommand.cpp; sourceTree = "<group>"; };
+ A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerapintailcommand.h; sourceTree = "<group>"; };
+ A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerarealigner.cpp; sourceTree = "<group>"; };
+ A7E9B68512D37EC400DA6239 /* chimerarealigner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerarealigner.h; sourceTree = "<group>"; };
+ A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraslayer.cpp; sourceTree = "<group>"; };
+ A7E9B68912D37EC400DA6239 /* chimeraslayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraslayer.h; sourceTree = "<group>"; };
+ A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraslayercommand.cpp; sourceTree = "<group>"; };
+ A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraslayercommand.h; sourceTree = "<group>"; };
+ A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = chopseqscommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chopseqscommand.h; sourceTree = "<group>"; };
+ A7E9B68E12D37EC400DA6239 /* classify.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classify.cpp; sourceTree = "<group>"; };
+ A7E9B68F12D37EC400DA6239 /* classify.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classify.h; sourceTree = "<group>"; };
+ A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyotucommand.cpp; sourceTree = "<group>"; };
+ A7E9B69112D37EC400DA6239 /* classifyotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyotucommand.h; sourceTree = "<group>"; };
+ A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyseqscommand.h; sourceTree = "<group>"; };
+ A7E9B69412D37EC400DA6239 /* clearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearcut.cpp; sourceTree = "<group>"; };
+ A7E9B69512D37EC400DA6239 /* clearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clearcut.h; sourceTree = "<group>"; };
+ A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearcutcommand.cpp; sourceTree = "<group>"; };
+ A7E9B69712D37EC400DA6239 /* clearcutcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clearcutcommand.h; sourceTree = "<group>"; };
+ A7E9B69812D37EC400DA6239 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
+ A7E9B69912D37EC400DA6239 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
+ A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clusterclassic.cpp; sourceTree = "<group>"; };
+ A7E9B69B12D37EC400DA6239 /* clusterclassic.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clusterclassic.h; sourceTree = "<group>"; };
+ A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
+ A7E9B69D12D37EC400DA6239 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
+ A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clusterdoturcommand.cpp; sourceTree = "<group>"; };
+ A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clusterdoturcommand.h; sourceTree = "<group>"; };
+ A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clusterfragmentscommand.cpp; sourceTree = "<group>"; };
+ A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clusterfragmentscommand.h; sourceTree = "<group>"; };
+ A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustersplitcommand.cpp; sourceTree = "<group>"; };
+ A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustersplitcommand.h; sourceTree = "<group>"; };
+ A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cmdargs.cpp; sourceTree = "<group>"; };
+ A7E9B6A512D37EC400DA6239 /* cmdargs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = cmdargs.h; sourceTree = "<group>"; };
+ A7E9B6A612D37EC400DA6239 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6A712D37EC400DA6239 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
+ A7E9B6A912D37EC400DA6239 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
+ A7E9B6AA12D37EC400DA6239 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6AB12D37EC400DA6239 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
+ A7E9B6AE12D37EC400DA6239 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
+ A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6B012D37EC400DA6239 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6B312D37EC400DA6239 /* common.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = common.h; sourceTree = "<group>"; };
+ A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6B512D37EC400DA6239 /* consensus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = consensus.cpp; sourceTree = "<group>"; };
+ A7E9B6B612D37EC400DA6239 /* consensus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = consensus.h; sourceTree = "<group>"; };
+ A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = consensusseqscommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = consensusseqscommand.h; sourceTree = "<group>"; };
+ A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = corraxescommand.cpp; sourceTree = "<group>"; };
+ A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = corraxescommand.h; sourceTree = "<group>"; };
+ A7E9B6BB12D37EC400DA6239 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
+ A7E9B6BC12D37EC400DA6239 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = "<group>"; };
+ A7E9B6BD12D37EC400DA6239 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
+ A7E9B6BE12D37EC400DA6239 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
+ A7E9B6BF12D37EC400DA6239 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
+ A7E9B6C012D37EC400DA6239 /* dayhoff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dayhoff.h; sourceTree = "<group>"; };
+ A7E9B6C112D37EC400DA6239 /* decalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = decalc.cpp; sourceTree = "<group>"; };
+ A7E9B6C212D37EC400DA6239 /* decalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = decalc.h; sourceTree = "<group>"; };
+ A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
+ A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
+ A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = degapseqscommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = degapseqscommand.h; sourceTree = "<group>"; };
+ A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deuniqueseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deuniqueseqscommand.h; sourceTree = "<group>"; };
+ A7E9B6C912D37EC400DA6239 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6CA12D37EC400DA6239 /* dist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dist.h; sourceTree = "<group>"; };
+ A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = distancecommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B6CC12D37EC400DA6239 /* distancecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = distancecommand.h; sourceTree = "<group>"; };
+ A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distancedb.cpp; sourceTree = "<group>"; };
+ A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = distancedb.hpp; sourceTree = "<group>"; };
+ A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distclearcut.cpp; sourceTree = "<group>"; };
+ A7E9B6D012D37EC400DA6239 /* distclearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = distclearcut.h; sourceTree = "<group>"; };
+ A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dlibshuff.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6D212D37EC400DA6239 /* dlibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dlibshuff.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6D312D37EC400DA6239 /* dmat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dmat.cpp; sourceTree = "<group>"; };
+ A7E9B6D412D37EC400DA6239 /* dmat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dmat.h; sourceTree = "<group>"; };
+ A7E9B6D512D37EC400DA6239 /* eachgapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapdist.h; sourceTree = "<group>"; };
+ A7E9B6D612D37EC400DA6239 /* eachgapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapignore.h; sourceTree = "<group>"; };
+ A7E9B6D712D37EC400DA6239 /* efron.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = efron.cpp; sourceTree = "<group>"; };
+ A7E9B6D812D37EC400DA6239 /* efron.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = efron.h; sourceTree = "<group>"; };
+ A7E9B6D912D37EC400DA6239 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = endiannessmacros.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6DA12D37EC400DA6239 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6DB12D37EC400DA6239 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6DC12D37EC400DA6239 /* fasta.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fasta.cpp; sourceTree = "<group>"; };
+ A7E9B6DD12D37EC400DA6239 /* fasta.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fasta.h; sourceTree = "<group>"; };
+ A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
+ A7E9B6DF12D37EC400DA6239 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
+ A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B6E112D37EC400DA6239 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = SOURCE_ROOT; };
+ A7E9B6E212D37EC400DA6239 /* filters.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filters.h; sourceTree = "<group>"; };
+ A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filterseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filterseqscommand.h; sourceTree = "<group>"; };
+ A7E9B6E712D37EC400DA6239 /* flowdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = flowdata.cpp; sourceTree = "<group>"; };
+ A7E9B6E812D37EC400DA6239 /* flowdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = flowdata.h; sourceTree = "<group>"; };
+ A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatcolumn.cpp; sourceTree = "<group>"; };
+ A7E9B6EA12D37EC400DA6239 /* formatcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatcolumn.h; sourceTree = "<group>"; };
+ A7E9B6EB12D37EC400DA6239 /* formatmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatmatrix.h; sourceTree = "<group>"; };
+ A7E9B6EC12D37EC400DA6239 /* formatphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatphylip.cpp; sourceTree = "<group>"; };
+ A7E9B6ED12D37EC400DA6239 /* formatphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatphylip.h; sourceTree = "<group>"; };
+ A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
+ A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
+ A7E9B6F012D37EC400DA6239 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
+ A7E9B6F112D37EC400DA6239 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
+ A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = getgroupcommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
+ A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupscommand.cpp; sourceTree = "<group>"; };
+ A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupscommand.h; sourceTree = "<group>"; };
+ A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
+ A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
+ A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlineagecommand.cpp; sourceTree = "<group>"; };
+ A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlineagecommand.h; sourceTree = "<group>"; };
+ A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlistcountcommand.cpp; sourceTree = "<group>"; };
+ A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlistcountcommand.h; sourceTree = "<group>"; };
+ A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getopt_long.cpp; sourceTree = "<group>"; };
+ A7E9B6FD12D37EC400DA6239 /* getopt_long.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getopt_long.h; sourceTree = "<group>"; };
+ A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getoturepcommand.cpp; sourceTree = "<group>"; };
+ A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getoturepcommand.h; sourceTree = "<group>"; };
+ A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getotuscommand.cpp; sourceTree = "<group>"; };
+ A7E9B70112D37EC400DA6239 /* getotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getotuscommand.h; sourceTree = "<group>"; };
+ A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = getrabundcommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B70312D37EC400DA6239 /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrabundcommand.h; sourceTree = "<group>"; };
+ A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrelabundcommand.cpp; sourceTree = "<group>"; };
+ A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrelabundcommand.h; sourceTree = "<group>"; };
+ A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = getsabundcommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B70712D37EC400DA6239 /* getsabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsabundcommand.h; sourceTree = "<group>"; };
+ A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B70912D37EC400DA6239 /* getseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getseqscommand.h; sourceTree = "<group>"; };
+ A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsharedotucommand.cpp; sourceTree = "<group>"; };
+ A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsharedotucommand.h; sourceTree = "<group>"; };
+ A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = goodscoverage.cpp; sourceTree = "<group>"; };
+ A7E9B70F12D37EC400DA6239 /* goodscoverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = goodscoverage.h; sourceTree = "<group>"; };
+ A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = gotohoverlap.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B71112D37EC400DA6239 /* gotohoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = gotohoverlap.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B71212D37EC400DA6239 /* gower.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = gower.cpp; sourceTree = "<group>"; };
+ A7E9B71312D37EC400DA6239 /* gower.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = gower.h; sourceTree = "<group>"; };
+ A7E9B71412D37EC400DA6239 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
+ A7E9B71512D37EC400DA6239 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
+ A7E9B71612D37EC400DA6239 /* hamming.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hamming.cpp; sourceTree = "<group>"; };
+ A7E9B71712D37EC400DA6239 /* hamming.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = hamming.h; sourceTree = "<group>"; };
+ A7E9B71812D37EC400DA6239 /* hcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hcluster.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B71912D37EC400DA6239 /* hcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = hcluster.h; sourceTree = SOURCE_ROOT; };
+ A7E9B71A12D37EC400DA6239 /* hclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hclustercommand.cpp; sourceTree = "<group>"; };
+ A7E9B71B12D37EC400DA6239 /* hclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = hclustercommand.h; sourceTree = "<group>"; };
+ A7E9B71C12D37EC400DA6239 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B71D12D37EC400DA6239 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = SOURCE_ROOT; };
+ A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = "<group>"; };
+ A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = "<group>"; };
+ A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapsim.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B72112D37EC400DA6239 /* heatmapsim.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapsim.h; sourceTree = SOURCE_ROOT; };
+ A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapsimcommand.cpp; sourceTree = "<group>"; };
+ A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapsimcommand.h; sourceTree = "<group>"; };
+ A7E9B72412D37EC400DA6239 /* heip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heip.cpp; sourceTree = "<group>"; };
+ A7E9B72512D37EC400DA6239 /* heip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heip.h; sourceTree = "<group>"; };
+ A7E9B72612D37EC400DA6239 /* hellinger.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hellinger.cpp; sourceTree = "<group>"; };
+ A7E9B72712D37EC400DA6239 /* hellinger.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = hellinger.h; sourceTree = "<group>"; };
+ A7E9B72812D37EC400DA6239 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
+ A7E9B72912D37EC400DA6239 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
+ A7E9B72A12D37EC400DA6239 /* ignoregaps.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ignoregaps.h; sourceTree = "<group>"; };
+ A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = indicatorcommand.cpp; sourceTree = "<group>"; };
+ A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = indicatorcommand.h; sourceTree = "<group>"; };
+ A7E9B72D12D37EC400DA6239 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B72E12D37EC400DA6239 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = SOURCE_ROOT; };
+ A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = invsimpson.cpp; sourceTree = "<group>"; };
+ A7E9B73012D37EC400DA6239 /* invsimpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = invsimpson.h; sourceTree = "<group>"; };
+ A7E9B73112D37EC400DA6239 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
+ A7E9B73212D37EC400DA6239 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
+ A7E9B73312D37EC400DA6239 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
+ A7E9B73412D37EC400DA6239 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
+ A7E9B73512D37EC400DA6239 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
+ A7E9B73612D37EC400DA6239 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
+ A7E9B73712D37EC400DA6239 /* knn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = knn.cpp; sourceTree = "<group>"; };
+ A7E9B73812D37EC400DA6239 /* knn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = knn.h; sourceTree = "<group>"; };
+ A7E9B73912D37EC400DA6239 /* libshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuff.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B73A12D37EC400DA6239 /* libshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuff.h; sourceTree = SOURCE_ROOT; };
+ A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = "<group>"; };
+ A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
+ A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = listseqscommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B73E12D37EC400DA6239 /* listseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = listseqscommand.h; sourceTree = "<group>"; };
+ A7E9B73F12D37EC400DA6239 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
+ A7E9B74012D37EC400DA6239 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
+ A7E9B74112D37EC400DA6239 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
+ A7E9B74212D37EC400DA6239 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = "<group>"; };
+ A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = makegroupcommand.cpp; sourceTree = "<group>"; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
+ A7E9B74412D37EC400DA6239 /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makegroupcommand.h; sourceTree = "<group>"; };
+ A7E9B74512D37EC400DA6239 /* maligner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = maligner.cpp; sourceTree = "<group>"; };
+ A7E9B74612D37EC400DA6239 /* maligner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = maligner.h; sourceTree = "<group>"; };
+ A7E9B74712D37EC400DA6239 /* manhattan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = manhattan.cpp; sourceTree = "<group>"; };
+ A7E9B74812D37EC400DA6239 /* manhattan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = manhattan.h; sourceTree = "<group>"; };
+ A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = matrixoutputcommand.cpp; sourceTree = "<group>"; };
+ A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = matrixoutputcommand.h; sourceTree = "<group>"; };
+ A7E9B74B12D37EC400DA6239 /* memchi2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = memchi2.cpp; sourceTree = "<group>"; };
+ A7E9B74C12D37EC400DA6239 /* memchi2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = memchi2.h; sourceTree = "<group>"; };
+ A7E9B74D12D37EC400DA6239 /* memchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = memchord.cpp; sourceTree = "<group>"; };
+ A7E9B74E12D37EC400DA6239 /* memchord.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = memchord.h; sourceTree = "<group>"; };
+ A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = memeuclidean.cpp; sourceTree = "<group>"; };
+ A7E9B75012D37EC400DA6239 /* memeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = memeuclidean.h; sourceTree = "<group>"; };
+ A7E9B75112D37EC400DA6239 /* mempearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mempearson.cpp; sourceTree = "<group>"; };
+ A7E9B75212D37EC400DA6239 /* mempearson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mempearson.h; sourceTree = "<group>"; };
+ A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergefilecommand.cpp; sourceTree = "<group>"; };
+ A7E9B75412D37EC400DA6239 /* mergefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergefilecommand.h; sourceTree = "<group>"; };
+ A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = metastatscommand.cpp; sourceTree = "<group>"; };
+ A7E9B75812D37EC400DA6239 /* metastatscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = metastatscommand.h; sourceTree = "<group>"; };
+ A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mgclustercommand.cpp; sourceTree = "<group>"; };
+ A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mgclustercommand.h; sourceTree = "<group>"; };
+ A7E9B75B12D37EC400DA6239 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B75C12D37EC400DA6239 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = SOURCE_ROOT; };
+ A7E9B75D12D37EC400DA6239 /* mothurout.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurout.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B75E12D37EC400DA6239 /* mothurout.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurout.h; sourceTree = SOURCE_ROOT; };
+ A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
+ A7E9B76012D37EC400DA6239 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
+ A7E9B76112D37EC400DA6239 /* nast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nast.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76212D37EC400DA6239 /* nast.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nast.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76312D37EC400DA6239 /* nastreport.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nastreport.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76412D37EC400DA6239 /* nastreport.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nastreport.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = needlemanoverlap.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76612D37EC400DA6239 /* needlemanoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = needlemanoverlap.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76712D37EC400DA6239 /* noalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = noalign.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76812D37EC400DA6239 /* noalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = noalign.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B76912D37EC400DA6239 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
+ A7E9B76A12D37EC400DA6239 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
+ A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = normalizesharedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = normalizesharedcommand.h; sourceTree = "<group>"; };
+ A7E9B76D12D37EC400DA6239 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
+ A7E9B76E12D37EC400DA6239 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
+ A7E9B76F12D37EC400DA6239 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
+ A7E9B77012D37EC400DA6239 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = SOURCE_ROOT; };
+ A7E9B77112D37EC400DA6239 /* odum.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = odum.cpp; sourceTree = "<group>"; };
+ A7E9B77212D37EC400DA6239 /* odum.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = odum.h; sourceTree = "<group>"; };
+ A7E9B77312D37EC400DA6239 /* onegapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = onegapdist.h; sourceTree = "<group>"; };
+ A7E9B77412D37EC400DA6239 /* onegapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = onegapignore.h; sourceTree = "<group>"; };
+ A7E9B77512D37EC400DA6239 /* optionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = optionparser.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B77612D37EC400DA6239 /* optionparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = optionparser.h; sourceTree = SOURCE_ROOT; };
+ A7E9B77712D37EC400DA6239 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
+ A7E9B77812D37EC400DA6239 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
+ A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuhierarchycommand.cpp; sourceTree = "<group>"; };
+ A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = otuhierarchycommand.h; sourceTree = "<group>"; };
+ A7E9B77B12D37EC400DA6239 /* overlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = overlap.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B77C12D37EC400DA6239 /* overlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = overlap.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pairwiseseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pairwiseseqscommand.h; sourceTree = "<group>"; };
+ A7E9B77F12D37EC400DA6239 /* parsefastaqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsefastaqcommand.cpp; sourceTree = "<group>"; };
+ A7E9B78012D37EC400DA6239 /* parsefastaqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsefastaqcommand.h; sourceTree = "<group>"; };
+ A7E9B78112D37EC400DA6239 /* parselistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistscommand.cpp; sourceTree = "<group>"; };
+ A7E9B78212D37EC400DA6239 /* parselistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistscommand.h; sourceTree = "<group>"; };
+ A7E9B78312D37EC400DA6239 /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
+ A7E9B78412D37EC400DA6239 /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
+ A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
+ A7E9B78612D37EC400DA6239 /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
+ A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pcoacommand.cpp; sourceTree = "<group>"; };
+ A7E9B78812D37EC400DA6239 /* pcoacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcoacommand.h; sourceTree = "<group>"; };
+ A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversitycommand.cpp; sourceTree = "<group>"; };
+ A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversitycommand.h; sourceTree = "<group>"; };
+ A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylosummary.cpp; sourceTree = "<group>"; };
+ A7E9B78E12D37EC400DA6239 /* phylosummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylosummary.h; sourceTree = "<group>"; };
+ A7E9B78F12D37EC400DA6239 /* phylotree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylotree.cpp; sourceTree = "<group>"; };
+ A7E9B79012D37EC400DA6239 /* phylotree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylotree.h; sourceTree = "<group>"; };
+ A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylotypecommand.cpp; sourceTree = "<group>"; };
+ A7E9B79212D37EC400DA6239 /* phylotypecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylotypecommand.h; sourceTree = "<group>"; };
+ A7E9B79312D37EC400DA6239 /* pintail.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pintail.cpp; sourceTree = "<group>"; };
+ A7E9B79412D37EC400DA6239 /* pintail.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pintail.h; sourceTree = "<group>"; };
+ A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pipelinepdscommand.cpp; sourceTree = "<group>"; };
+ A7E9B79612D37EC400DA6239 /* pipelinepdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pipelinepdscommand.h; sourceTree = "<group>"; };
+ A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = preclustercommand.cpp; sourceTree = "<group>"; };
+ A7E9B79812D37EC400DA6239 /* preclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = preclustercommand.h; sourceTree = "<group>"; };
+ A7E9B79912D37EC400DA6239 /* prng.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = prng.cpp; sourceTree = "<group>"; };
+ A7E9B79A12D37EC400DA6239 /* prng.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = prng.h; sourceTree = "<group>"; };
+ A7E9B79B12D37EC400DA6239 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B79C12D37EC400DA6239 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = SOURCE_ROOT; };
+ A7E9B79D12D37EC400DA6239 /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
+ A7E9B79E12D37EC400DA6239 /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = "<group>"; };
+ A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qualityscores.cpp; sourceTree = "<group>"; };
+ A7E9B7A012D37EC400DA6239 /* qualityscores.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qualityscores.h; sourceTree = "<group>"; };
+ A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
+ A7E9B7A212D37EC400DA6239 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
+ A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
+ A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
+ A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B7A612D37EC400DA6239 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = SOURCE_ROOT; };
+ A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B7A812D37EC400DA6239 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = SOURCE_ROOT; };
+ A7E9B7A912D37EC400DA6239 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B7AA12D37EC400DA6239 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = SOURCE_ROOT; };
+ A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
+ A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
+ A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = SOURCE_ROOT; };
+ A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
+ A7E9B7B012D37EC400DA6239 /* readblast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readblast.cpp; sourceTree = "<group>"; };
+ A7E9B7B112D37EC400DA6239 /* readblast.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readblast.h; sourceTree = "<group>"; };
+ A7E9B7B212D37EC400DA6239 /* readcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readcluster.cpp; sourceTree = "<group>"; };
+ A7E9B7B312D37EC400DA6239 /* readcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readcluster.h; sourceTree = "<group>"; };
+ A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readcolumn.cpp; sourceTree = "<group>"; };
+ A7E9B7B512D37EC400DA6239 /* readcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readcolumn.h; sourceTree = "<group>"; };
+ A7E9B7B812D37EC400DA6239 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
+ A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylip.cpp; sourceTree = "<group>"; };
+ A7E9B7BE12D37EC400DA6239 /* readphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylip.h; sourceTree = "<group>"; };
+ A7E9B7BF12D37EC400DA6239 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
+ A7E9B7C012D37EC400DA6239 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
+ A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removegroupscommand.cpp; sourceTree = "<group>"; };
+ A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removegroupscommand.h; sourceTree = "<group>"; };
+ A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removelineagecommand.cpp; sourceTree = "<group>"; };
+ A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removelineagecommand.h; sourceTree = "<group>"; };
+ A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeotuscommand.cpp; sourceTree = "<group>"; };
+ A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeotuscommand.h; sourceTree = "<group>"; };
+ A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeseqscommand.h; sourceTree = "<group>"; };
+ A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = reportfile.cpp; sourceTree = "<group>"; };
+ A7E9B7CC12D37EC400DA6239 /* reportfile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = reportfile.h; sourceTree = "<group>"; };
+ A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = reversecommand.cpp; sourceTree = "<group>"; };
+ A7E9B7CE12D37EC400DA6239 /* reversecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = reversecommand.h; sourceTree = "<group>"; };
+ A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
+ A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
+ A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = screenseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = screenseqscommand.h; sourceTree = "<group>"; };
+ A7E9B7D312D37EC400DA6239 /* secondarystructurecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = secondarystructurecommand.cpp; sourceTree = "<group>"; };
+ A7E9B7D412D37EC400DA6239 /* secondarystructurecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = secondarystructurecommand.h; sourceTree = "<group>"; };
+ A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sensspeccommand.cpp; sourceTree = "<group>"; };
+ A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sensspeccommand.h; sourceTree = "<group>"; };
+ A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqerrorcommand.cpp; sourceTree = "<group>"; };
+ A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqerrorcommand.h; sourceTree = "<group>"; };
+ A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqsummarycommand.cpp; sourceTree = "<group>"; };
+ A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqsummarycommand.h; sourceTree = "<group>"; };
+ A7E9B7DB12D37EC400DA6239 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
+ A7E9B7DC12D37EC400DA6239 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
+ A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencedb.cpp; sourceTree = "<group>"; };
+ A7E9B7DE12D37EC400DA6239 /* sequencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencedb.h; sourceTree = "<group>"; };
+ A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setdircommand.cpp; sourceTree = "<group>"; };
+ A7E9B7E012D37EC400DA6239 /* setdircommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setdircommand.h; sourceTree = "<group>"; };
+ A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setlogfilecommand.cpp; sourceTree = "<group>"; };
+ A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setlogfilecommand.h; sourceTree = "<group>"; };
+ A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffinfocommand.cpp; sourceTree = "<group>"; };
+ A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sffinfocommand.h; sourceTree = "<group>"; };
+ A7E9B7E512D37EC400DA6239 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
+ A7E9B7E612D37EC400DA6239 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
+ A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannoneven.cpp; sourceTree = "<group>"; };
+ A7E9B7E812D37EC400DA6239 /* shannoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannoneven.h; sourceTree = "<group>"; };
+ A7E9B7E912D37EC400DA6239 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
+ A7E9B7EA12D37EC400DA6239 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
+ A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderbergs.cpp; sourceTree = "<group>"; };
+ A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderbergs.h; sourceTree = "<group>"; };
+ A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
+ A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
+ A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
+ A7E9B7F112D37EC400DA6239 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
+ A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B7F312D37EC400DA6239 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
+ A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
+ A7E9B7F512D37EC400DA6239 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
+ A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjackknife.cpp; sourceTree = "<group>"; };
+ A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjackknife.h; sourceTree = "<group>"; };
+ A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
+ A7E9B7F912D37EC400DA6239 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
+ A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
+ A7E9B7FB12D37EC400DA6239 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
+ A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = "<group>"; };
+ A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
+ A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = "<group>"; };
+ A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = "<group>"; };
+ A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
+ A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
+ A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlennon.cpp; sourceTree = "<group>"; };
+ A7E9B80312D37EC400DA6239 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
+ A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
+ A7E9B80512D37EC400DA6239 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
+ A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmarczewski.cpp; sourceTree = "<group>"; };
+ A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmarczewski.h; sourceTree = "<group>"; };
+ A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
+ A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
+ A7E9B80A12D37EC400DA6239 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
+ A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
+ A7E9B80C12D37EC400DA6239 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
+ A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
+ A7E9B80E12D37EC400DA6239 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
+ A7E9B80F12D37EC400DA6239 /* sharedrabundfloatvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundfloatvector.cpp; sourceTree = "<group>"; };
+ A7E9B81012D37EC400DA6239 /* sharedrabundfloatvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundfloatvector.h; sourceTree = "<group>"; };
+ A7E9B81112D37EC400DA6239 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
+ A7E9B81212D37EC400DA6239 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
+ A7E9B81312D37EC400DA6239 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
+ A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
+ A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
+ A7E9B81612D37EC400DA6239 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
+ A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
+ A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
+ A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
+ A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
+ A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
+ A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
+ A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
+ A7E9B81E12D37EC400DA6239 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
+ A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
+ A7E9B82012D37EC400DA6239 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
+ A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
+ A7E9B82212D37EC400DA6239 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
+ A7E9B82312D37EC400DA6239 /* sharedutilities.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedutilities.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B82412D37EC400DA6239 /* sharedutilities.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedutilities.h; sourceTree = SOURCE_ROOT; };
+ A7E9B82512D37EC400DA6239 /* shen.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shen.cpp; sourceTree = "<group>"; };
+ A7E9B82612D37EC400DA6239 /* shen.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shen.h; sourceTree = "<group>"; };
+ A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shhhercommand.cpp; sourceTree = "<group>"; };
+ A7E9B82812D37EC400DA6239 /* shhhercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shhhercommand.h; sourceTree = "<group>"; };
+ A7E9B82912D37EC400DA6239 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
+ A7E9B82A12D37EC400DA6239 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
+ A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpsoneven.cpp; sourceTree = "<group>"; };
+ A7E9B82C12D37EC400DA6239 /* simpsoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpsoneven.h; sourceTree = "<group>"; };
+ A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B82E12D37EC400DA6239 /* slayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slayer.cpp; sourceTree = "<group>"; };
+ A7E9B82F12D37EC400DA6239 /* slayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slayer.h; sourceTree = "<group>"; };
+ A7E9B83012D37EC400DA6239 /* slibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slibshuff.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B83112D37EC400DA6239 /* slibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slibshuff.h; sourceTree = SOURCE_ROOT; };
+ A7E9B83212D37EC400DA6239 /* smithwilson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = smithwilson.cpp; sourceTree = "<group>"; };
+ A7E9B83312D37EC400DA6239 /* smithwilson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = smithwilson.h; sourceTree = "<group>"; };
+ A7E9B83412D37EC400DA6239 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
+ A7E9B83512D37EC400DA6239 /* soergel.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = soergel.cpp; sourceTree = "<group>"; };
+ A7E9B83612D37EC400DA6239 /* soergel.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = soergel.h; sourceTree = "<group>"; };
+ A7E9B83712D37EC400DA6239 /* solow.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = solow.cpp; sourceTree = "<group>"; };
+ A7E9B83812D37EC400DA6239 /* solow.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = solow.h; sourceTree = "<group>"; };
+ A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
+ A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
+ A7E9B83B12D37EC400DA6239 /* spearman.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = spearman.cpp; sourceTree = "<group>"; };
+ A7E9B83C12D37EC400DA6239 /* spearman.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = spearman.h; sourceTree = "<group>"; };
+ A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = speciesprofile.cpp; sourceTree = "<group>"; };
+ A7E9B83E12D37EC400DA6239 /* speciesprofile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = speciesprofile.h; sourceTree = "<group>"; };
+ A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitabundcommand.cpp; sourceTree = "<group>"; };
+ A7E9B84012D37EC400DA6239 /* splitabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitabundcommand.h; sourceTree = "<group>"; };
+ A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitgroupscommand.cpp; sourceTree = "<group>"; };
+ A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitgroupscommand.h; sourceTree = "<group>"; };
+ A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitmatrix.cpp; sourceTree = "<group>"; };
+ A7E9B84412D37EC400DA6239 /* splitmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitmatrix.h; sourceTree = "<group>"; };
+ A7E9B84512D37EC400DA6239 /* structchi2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structchi2.cpp; sourceTree = "<group>"; };
+ A7E9B84612D37EC400DA6239 /* structchi2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structchi2.h; sourceTree = "<group>"; };
+ A7E9B84712D37EC400DA6239 /* structchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structchord.cpp; sourceTree = "<group>"; };
+ A7E9B84812D37EC400DA6239 /* structchord.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structchord.h; sourceTree = "<group>"; };
+ A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structeuclidean.cpp; sourceTree = "<group>"; };
+ A7E9B84A12D37EC400DA6239 /* structeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structeuclidean.h; sourceTree = "<group>"; };
+ A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structkulczynski.cpp; sourceTree = "<group>"; };
+ A7E9B84C12D37EC400DA6239 /* structkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structkulczynski.h; sourceTree = "<group>"; };
+ A7E9B84D12D37EC400DA6239 /* structpearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = structpearson.cpp; sourceTree = "<group>"; };
+ A7E9B84E12D37EC400DA6239 /* structpearson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = structpearson.h; sourceTree = "<group>"; };
+ A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = subsamplecommand.cpp; sourceTree = "<group>"; };
+ A7E9B85012D37EC400DA6239 /* subsamplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = subsamplecommand.h; sourceTree = "<group>"; };
+ A7E9B85112D37EC400DA6239 /* suffixdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixdb.cpp; sourceTree = "<group>"; };
+ A7E9B85212D37EC400DA6239 /* suffixdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixdb.hpp; sourceTree = "<group>"; };
+ A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixnodes.cpp; sourceTree = "<group>"; };
+ A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixnodes.hpp; sourceTree = "<group>"; };
+ A7E9B85512D37EC400DA6239 /* suffixtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixtree.cpp; sourceTree = "<group>"; };
+ A7E9B85612D37EC400DA6239 /* suffixtree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixtree.hpp; sourceTree = "<group>"; };
+ A7E9B85712D37EC400DA6239 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
+ A7E9B85812D37EC400DA6239 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
+ A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
+ A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = systemcommand.cpp; sourceTree = "<group>"; };
+ A7E9B85C12D37EC400DA6239 /* systemcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = systemcommand.h; sourceTree = "<group>"; };
+ A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = taxonomyequalizer.cpp; sourceTree = "<group>"; };
+ A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = taxonomyequalizer.h; sourceTree = "<group>"; };
+ A7E9B85F12D37EC400DA6239 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
+ A7E9B86012D37EC400DA6239 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
+ A7E9B86112D37EC400DA6239 /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
+ A7E9B86212D37EC400DA6239 /* treegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treegroupscommand.cpp; sourceTree = "<group>"; };
+ A7E9B86312D37EC400DA6239 /* treegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treegroupscommand.h; sourceTree = "<group>"; };
+ A7E9B86412D37EC400DA6239 /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
+ A7E9B86512D37EC400DA6239 /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
+ A7E9B86612D37EC400DA6239 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
+ A7E9B86712D37EC400DA6239 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
+ A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimflowscommand.cpp; sourceTree = "<group>"; };
+ A7E9B86912D37EC400DA6239 /* trimflowscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trimflowscommand.h; sourceTree = "<group>"; };
+ A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimseqscommand.cpp; sourceTree = "<group>"; };
+ A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trimseqscommand.h; sourceTree = "<group>"; };
+ A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
+ A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
+ A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
+ A7E9B87012D37EC400DA6239 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
+ A7E9B87112D37EC400DA6239 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
+ A7E9B87212D37EC400DA6239 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
+ A7E9B87312D37EC400DA6239 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
+ A7E9B87412D37EC400DA6239 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B87512D37EC400DA6239 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = SOURCE_ROOT; };
+ A7E9B87612D37EC400DA6239 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B87712D37EC400DA6239 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = SOURCE_ROOT; };
+ A7E9B87812D37EC400DA6239 /* venn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venn.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B87912D37EC400DA6239 /* venn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venn.h; sourceTree = SOURCE_ROOT; };
+ A7E9B87A12D37EC400DA6239 /* venncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venncommand.cpp; sourceTree = "<group>"; };
+ A7E9B87B12D37EC400DA6239 /* venncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venncommand.h; sourceTree = "<group>"; };
+ A7E9B87C12D37EC400DA6239 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
+ A7E9B87D12D37EC400DA6239 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
+ A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = SOURCE_ROOT; };
+ A7E9B87F12D37EC400DA6239 /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = whittaker.cpp; sourceTree = "<group>"; };
+ A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = "<group>"; };
+ A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifytreecommand.cpp; sourceTree = "<group>"; };
+ A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifytreecommand.h; sourceTree = "<group>"; };
+ A7F9F5CD141A5E500032F693 /* sequenceparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequenceparser.h; sourceTree = "<group>"; };
+ A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequenceparser.cpp; sourceTree = "<group>"; };
+ A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = "<group>"; };
+ A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mantelcommand.cpp; sourceTree = "<group>"; };
+ A7FA2ABC14A0E881007C09A6 /* bsplvb.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = bsplvb.f; sourceTree = "<group>"; };
+ A7FA2ABD14A0E881007C09A6 /* bsplvd.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = bsplvd.f; sourceTree = "<group>"; };
+ A7FA2ABE14A0E881007C09A6 /* bvalue.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = bvalue.f; sourceTree = "<group>"; };
+ A7FA2ABF14A0E881007C09A6 /* daxpy.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = daxpy.f; sourceTree = "<group>"; };
+ A7FA2AC014A0E881007C09A6 /* ddot.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = ddot.f; sourceTree = "<group>"; };
+ A7FA2AC114A0E881007C09A6 /* dpbfa.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbfa.f; sourceTree = "<group>"; };
+ A7FA2AC214A0E881007C09A6 /* dpbsl.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbsl.f; sourceTree = "<group>"; };
+ A7FA2AC314A0E881007C09A6 /* interv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = interv.f; sourceTree = "<group>"; };
+ A7FA2AC414A0E881007C09A6 /* sgram.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sgram.f; sourceTree = "<group>"; };
+ A7FA2AC514A0E881007C09A6 /* sinerp.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sinerp.f; sourceTree = "<group>"; };
+ A7FA2AC614A0E881007C09A6 /* stxwx.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = stxwx.f; sourceTree = "<group>"; };
+ A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sslvrg.f; sourceTree = "<group>"; };
+ A7FA2B5A14A0F0C2007C09A6 /* intrv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = intrv.f; sourceTree = "<group>"; };
+ A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = linearalgebra.h; sourceTree = "<group>"; };
+ A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
+ A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcacommand.h; sourceTree = "<group>"; };
+ A7FC486612D795D60055BC5C /* pcacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pcacommand.cpp; sourceTree = "<group>"; };
+ A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcurrentcommand.h; sourceTree = "<group>"; };
+ A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcurrentcommand.cpp; sourceTree = "<group>"; };
+ A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setcurrentcommand.h; sourceTree = "<group>"; };
+ A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setcurrentcommand.cpp; sourceTree = "<group>"; };
+ A7FF19F0140FFDA500AD216D /* trimoligos.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trimoligos.h; sourceTree = "<group>"; };
+ A7FF19F1140FFDA500AD216D /* trimoligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimoligos.cpp; sourceTree = "<group>"; };
+ A7FFB556142CA02C004884F2 /* summarytaxcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarytaxcommand.h; sourceTree = "<group>"; };
+ A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarytaxcommand.cpp; sourceTree = "<group>"; };
C6A0FF2C0290799A04C91782 /* mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = mothur.1; sourceTree = "<group>"; };
/* End PBXFileReference section */
A7A61F1A130035C800E05B6B /* LICENSE */,
A70332B512D3A13400761E33 /* makefile */,
A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */,
+ A77B718A173D40E4002163C2 /* calcsparcc.h */,
+ A77B7189173D40E4002163C2 /* calcsparcc.cpp */,
A7E9BA4F12D398D700DA6239 /* clearcut */,
A7E9B69812D37EC400DA6239 /* cluster.cpp */,
A7E9B69912D37EC400DA6239 /* cluster.hpp */,
A7E9B77C12D37EC400DA6239 /* overlap.hpp */,
A7E9B79B12D37EC400DA6239 /* progress.cpp */,
A7E9B79C12D37EC400DA6239 /* progress.hpp */,
+ A7548FAF171440ED00B1F05A /* qFinderDMM.h */,
+ A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */,
+ A77B7187173D4041002163C2 /* randomnumber.h */,
+ A77B7186173D4041002163C2 /* randomnumber.cpp */,
A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */,
+ A7386C191619C9FB00651424 /* randomforest */,
A7E9B7A612D37EC400DA6239 /* rarecalc.h */,
A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */,
A7E9B7A812D37EC400DA6239 /* raredisplay.h */,
1AB674ADFE9D54B511CA2CBB /* Products */ = {
isa = PBXGroup;
children = (
- 8DD76FB20486AB0100D96B5E /* Mothur */,
+ 8DD76FB20486AB0100D96B5E /* mothur */,
);
name = Products;
sourceTree = "<group>";
};
+ A7386C191619C9FB00651424 /* randomforest */ = {
+ isa = PBXGroup;
+ children = (
+ A7386C1B1619CACB00651424 /* abstractdecisiontree.hpp */,
+ A7386C241619E52200651424 /* abstractdecisiontree.cpp */,
+ A7386C1D1619CACB00651424 /* decisiontree.hpp */,
+ A7386C28161A110700651424 /* decisiontree.cpp */,
+ A7386C1E1619CACB00651424 /* macros.h */,
+ A7386C1F1619CACB00651424 /* randomforest.hpp */,
+ A77E1937161B201E00DB1A2A /* randomforest.cpp */,
+ A7386C201619CACB00651424 /* rftreenode.hpp */,
+ A77E193A161B289600DB1A2A /* rftreenode.cpp */,
+ 83F25B0A163B031200ABE73D /* forest.cpp */,
+ 83F25B0B163B031200ABE73D /* forest.h */,
+ 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */,
+ 834D9D571656D7C400E7FAB9 /* regularizedrandomforest.h */,
+ 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */,
+ 834D9D5B1656DEC700E7FAB9 /* regularizeddecisiontree.h */,
+ );
+ name = randomforest;
+ sourceTree = "<group>";
+ };
A7D161E7149F7F50000523E8 /* fortran */ = {
isa = PBXGroup;
children = (
isa = PBXGroup;
children = (
A7E9B6AE12D37EC400DA6239 /* command.hpp */,
+ 219C1DE11552C508004209F9 /* newcommandtemplate.h */,
+ 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */,
A7E9B65212D37EC300DA6239 /* aligncommand.h */,
A7E9B65112D37EC300DA6239 /* aligncommand.cpp */,
A7A61F2B130062E000E05B6B /* amovacommand.h */,
A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */,
A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */,
A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */,
+ A7386C221619CCE600651424 /* classifysharedcommand.h */,
+ A7386C211619CCE600651424 /* classifysharedcommand.cpp */,
A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */,
A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */,
A7E9B69712D37EC400DA6239 /* clearcutcommand.h */,
A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */,
A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */,
A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */,
+ A79EEF8816971D640006DEC1 /* filtersharedcommand.h */,
+ A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */,
A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */,
A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */,
+ 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */,
+ 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */,
A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */,
A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */,
+ A7128B1A16B7001200723BE4 /* getdistscommand.h */,
+ A7128B1C16B7002600723BE4 /* getdistscommand.cpp */,
A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */,
A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */,
A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */,
A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */,
A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */,
A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */,
+ A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */,
+ A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */,
+ A70056E8156A93E300924A2D /* getotulabelscommand.h */,
+ A70056E5156A93D000924A2D /* getotulabelscommand.cpp */,
A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */,
A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */,
A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */,
A75790581301749D00A30DAB /* homovacommand.cpp */,
A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */,
A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
+ A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */,
+ A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */,
A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
+ A7A0671C156294810095C8C5 /* listotulabelscommand.h */,
+ A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */,
A7E9B73E12D37EC400DA6239 /* listseqscommand.h */,
A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */,
+ A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */,
+ A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */,
A7FA10001302E096003860FE /* mantelcommand.h */,
A7FA10011302E096003860FE /* mantelcommand.cpp */,
A724D2B4153C8600000A826F /* makebiomcommand.h */,
A724D2B6153C8628000A826F /* makebiomcommand.cpp */,
+ A7A0671D1562AC230095C8C5 /* makecontigscommand.h */,
+ A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */,
A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */,
A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
+ A7E6F69C17427CF2006775E2 /* makelookupcommand.h */,
+ A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */,
A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */,
A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */,
A7E9B75412D37EC400DA6239 /* mergefilecommand.h */,
A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */,
A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */,
A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */,
+ A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */,
+ A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */,
A7E9B75812D37EC400DA6239 /* metastatscommand.h */,
A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */,
A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */,
A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */,
A7E9B79812D37EC400DA6239 /* preclustercommand.h */,
A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */,
+ A74C06E616A9C097008390A3 /* primerdesigncommand.h */,
+ A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */,
A7E9B7A212D37EC400DA6239 /* quitcommand.h */,
A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */,
A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */,
A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */,
A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */,
A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */,
- A7E9B7B712D37EC400DA6239 /* readdistcommand.h */,
- A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */,
- A7E9B7BC12D37EC400DA6239 /* readotucommand.h */,
- A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */,
- A7E9B7C212D37EC400DA6239 /* readtreecommand.h */,
- A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */,
+ A7B0231716B8245D006BA09E /* removedistscommand.h */,
+ A7B0231416B8244B006BA09E /* removedistscommand.cpp */,
A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */,
A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */,
A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */,
A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */,
A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */,
A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */,
+ A70056E9156AB6D400924A2D /* removeotulabelscommand.h */,
+ A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */,
A727864212E9E28C00F86ABA /* removerarecommand.h */,
A727864312E9E28C00F86ABA /* removerarecommand.cpp */,
A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */,
A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */,
+ A7CFA42F1755400500D9ED4D /* renameseqscommand.h */,
+ A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */,
A7E9B7CE12D37EC400DA6239 /* reversecommand.h */,
A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */,
A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */,
A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */,
A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */,
A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */,
+ A7C7DAB615DA75760059B0CF /* sffmultiplecommand.h */,
+ A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */,
A7E9B7F312D37EC400DA6239 /* sharedcommand.h */,
A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */,
A7E9B82812D37EC400DA6239 /* shhhercommand.h */,
A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */,
A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */,
+ A77B7183173D222F002163C2 /* sparcccommand.h */,
+ A77B7184173D2240002163C2 /* sparcccommand.cpp */,
A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
A7E9B67112D37EC400DA6239 /* canberra.h */,
A7E9B67612D37EC400DA6239 /* chao1.cpp */,
A7E9B67712D37EC400DA6239 /* chao1.h */,
- A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */,
- A7E9B6A512D37EC400DA6239 /* cmdargs.h */,
A7E9B6BB12D37EC400DA6239 /* coverage.cpp */,
A7E9B6BC12D37EC400DA6239 /* coverage.h */,
A7E9B6CA12D37EC400DA6239 /* dist.h */,
A7E9B66312D37EC400DA6239 /* blastalign.hpp */,
A7E9B66412D37EC400DA6239 /* blastdb.cpp */,
A7E9B66512D37EC400DA6239 /* blastdb.hpp */,
+ A74D59A6159A1E3600043046 /* counttable.h */,
+ A74D59A3159A1E2000043046 /* counttable.cpp */,
A7E9B6BD12D37EC400DA6239 /* database.cpp */,
A7E9B6BE12D37EC400DA6239 /* database.hpp */,
A7E9B6BF12D37EC400DA6239 /* datavector.hpp */,
- A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */,
+ A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */,
A7E9B6DF12D37EC400DA6239 /* fastamap.h */,
A7E9B6E812D37EC400DA6239 /* flowdata.h */,
A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */,
A7E9B7DB12D37EC400DA6239 /* sequence.cpp */,
A7E9B7DC12D37EC400DA6239 /* sequence.hpp */,
+ A741FAD415D168A00067BCC5 /* sequencecountparser.h */,
+ A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */,
A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */,
A7E9B7DE12D37EC400DA6239 /* sequencedb.h */,
A7F9F5CD141A5E500032F693 /* sequenceparser.h */,
A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */,
A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */,
A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */,
+ A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */,
+ A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */,
A7E9B85112D37EC400DA6239 /* suffixdb.cpp */,
A7E9B85212D37EC400DA6239 /* suffixdb.hpp */,
A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */,
A7E9BA4B12D3966900DA6239 /* classifier */ = {
isa = PBXGroup;
children = (
- A7E9B65A12D37EC300DA6239 /* bayesian.cpp */,
+ A721AB67161C570F009860A1 /* alignnode.h */,
+ A721AB66161C570F009860A1 /* alignnode.cpp */,
+ A721AB69161C570F009860A1 /* aligntree.h */,
+ A721AB68161C570F009860A1 /* aligntree.cpp */,
A7E9B65B12D37EC300DA6239 /* bayesian.h */,
+ A7E9B65A12D37EC300DA6239 /* bayesian.cpp */,
A7E9B68E12D37EC400DA6239 /* classify.cpp */,
A7E9B68F12D37EC400DA6239 /* classify.h */,
+ A721AB6E161C572A009860A1 /* kmernode.h */,
+ A721AB6D161C572A009860A1 /* kmernode.cpp */,
+ A721AB70161C572A009860A1 /* kmertree.h */,
+ A721AB6F161C572A009860A1 /* kmertree.cpp */,
A7E9B73812D37EC400DA6239 /* knn.h */,
A7E9B73712D37EC400DA6239 /* knn.cpp */,
A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */,
A7E9B79012D37EC400DA6239 /* phylotree.h */,
A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */,
A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */,
+ A721AB74161C573B009860A1 /* taxonomynode.h */,
+ A721AB73161C573B009860A1 /* taxonomynode.cpp */,
);
name = classifier;
sourceTree = "<group>";
children = (
A7E9B69412D37EC400DA6239 /* clearcut.cpp */,
A7E9B69512D37EC400DA6239 /* clearcut.h */,
+ A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */,
+ A7E9B6A512D37EC400DA6239 /* cmdargs.h */,
A7E9B6B312D37EC400DA6239 /* common.h */,
A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */,
A7E9B6D012D37EC400DA6239 /* distclearcut.h */,
name = Mothur;
productInstallPath = "$(HOME)/bin";
productName = mothur;
- productReference = 8DD76FB20486AB0100D96B5E /* Mothur */;
+ productReference = 8DD76FB20486AB0100D96B5E /* mothur */;
productType = "com.apple.product-type.tool";
};
/* End PBXNativeTarget section */
08FB7793FE84155DC02AAC07 /* Project object */ = {
isa = PBXProject;
attributes = {
- LastUpgradeCheck = 0420;
+ LastUpgradeCheck = 0460;
ORGANIZATIONNAME = "Schloss Lab";
};
buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */,
A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */,
A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */,
- A7E9B92C12D37EC400DA6239 /* readdistcommand.cpp in Sources */,
- A7E9B92E12D37EC400DA6239 /* readotucommand.cpp in Sources */,
A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */,
A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */,
- A7E9B93112D37EC400DA6239 /* readtreecommand.cpp in Sources */,
A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */,
A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */,
A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */,
A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */,
A7D755DA1535F679009BF21A /* treereader.cpp in Sources */,
A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */,
+ 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */,
+ 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */,
+ A7A0671A1562946F0095C8C5 /* listotulabelscommand.cpp in Sources */,
+ A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */,
+ A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */,
+ A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */,
+ A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */,
+ A74D59A4159A1E2000043046 /* counttable.cpp in Sources */,
+ A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */,
+ A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */,
+ A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */,
+ A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */,
+ A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */,
+ A7386C29161A110800651424 /* decisiontree.cpp in Sources */,
+ A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */,
+ A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */,
+ A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */,
+ A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */,
+ A721AB71161C572A009860A1 /* kmernode.cpp in Sources */,
+ A721AB72161C572A009860A1 /* kmertree.cpp in Sources */,
+ A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */,
+ 83F25B0C163B031200ABE73D /* forest.cpp in Sources */,
+ 834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */,
+ 834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */,
+ A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */,
+ A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */,
+ A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */,
+ A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */,
+ A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */,
+ A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */,
+ A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */,
+ A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */,
+ A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */,
+ A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */,
+ A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */,
+ A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */,
+ A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */,
);
runOnlyForDeploymentPostprocessing = 0;
};
buildSettings = {
ALWAYS_SEARCH_USER_PATHS = NO;
COPY_PHASE_STRIP = NO;
+ DEPLOYMENT_LOCATION = YES;
+ DSTROOT = TARGET_BUILD_DIR;
+ "DSTROOT[sdk=*]" = TARGET_BUILD_DIR;
GCC_DYNAMIC_NO_PIC = NO;
GCC_MODEL_TUNING = G5;
- GCC_OPTIMIZATION_LEVEL = 0;
- INSTALL_PATH = /usr/local/bin;
- PRODUCT_NAME = Mothur;
- SDKROOT = macosx10.6;
+ GCC_OPTIMIZATION_LEVEL = 3;
+ "INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR;
+ PRODUCT_NAME = mothur;
+ SDKROOT = macosx10.8;
+ SKIP_INSTALL = NO;
};
name = Debug;
};
ALWAYS_SEARCH_USER_PATHS = NO;
DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
DEPLOYMENT_LOCATION = YES;
+ DSTROOT = TARGET_BUILD_DIR;
GCC_MODEL_TUNING = G5;
+ GCC_OPTIMIZATION_LEVEL = 3;
GCC_WARN_UNUSED_VALUE = YES;
- INSTALL_PATH = ./;
- PRODUCT_NAME = Mothur;
+ PRODUCT_NAME = mothur;
+ SDKROOT = macosx;
+ SKIP_INSTALL = NO;
};
name = Release;
};
GCC_ENABLE_SSE3_EXTENSIONS = NO;
GCC_ENABLE_SSE41_EXTENSIONS = NO;
GCC_ENABLE_SSE42_EXTENSIONS = NO;
- GCC_OPTIMIZATION_LEVEL = 0;
+ GCC_OPTIMIZATION_LEVEL = s;
GCC_PREPROCESSOR_DEFINITIONS = (
- "MOTHUR_FILES=\"\\\"../release\\\"\"",
- "VERSION=\"\\\"1.24.0\\\"\"",
- "RELEASE_DATE=\"\\\"3/12/2012\\\"\"",
+ "MOTHUR_FILES=\"\\\"../../release\\\"\"",
+ "VERSION=\"\\\"1.31.0\\\"\"",
+ "RELEASE_DATE=\"\\\"5/24/2013\\\"\"",
);
"GCC_VERSION[arch=*]" = "";
GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
GCC_WARN_ABOUT_RETURN_TYPE = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
HEADER_SEARCH_PATHS = "";
- INSTALL_PATH = "";
+ INSTALL_PATH = TARGET_BUILD_DIR;
MACH_O_TYPE = mh_execute;
ONLY_ACTIVE_ARCH = YES;
OTHER_CPLUSPLUSFLAGS = (
"-lncurses",
"-lreadline",
);
- SDKROOT = macosx10.6;
+ SDKROOT = macosx;
+ SKIP_INSTALL = NO;
USER_HEADER_SEARCH_PATHS = "";
};
name = Debug;
GCC_C_LANGUAGE_STANDARD = gnu99;
GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
GCC_MODEL_TUNING = "";
- GCC_OPTIMIZATION_LEVEL = 0;
+ GCC_OPTIMIZATION_LEVEL = s;
GCC_PREPROCESSOR_DEFINITIONS = (
- "VERSION=\"\\\"1.25.0\\\"\"",
- "RELEASE_DATE=\"\\\"4/30/2012\\\"\"",
+ "VERSION=\"\\\"1.31.0\\\"\"",
+ "RELEASE_DATE=\"\\\"5/24/2013\\\"\"",
);
GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
GCC_WARN_ABOUT_RETURN_TYPE = YES;
GCC_WARN_UNUSED_PARAMETER = YES;
GCC_WARN_UNUSED_VALUE = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
- INSTALL_PATH = "";
+ INSTALL_PATH = TARGET_BUILD_DIR;
MACH_O_TYPE = mh_execute;
OTHER_CPLUSPLUSFLAGS = (
"-DUSE_READLINE",
"-lncurses",
"-lreadline",
);
- SDKROOT = macosx10.6;
+ SDKROOT = macosx;
+ SKIP_INSTALL = NO;
};
name = Release;
};
1DEB928708733DD80010E9CD /* Release */,
);
defaultConfigurationIsVisible = 0;
- defaultConfigurationName = Release;
+ defaultConfigurationName = Debug;
};
1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
isa = XCConfigurationList;
1DEB928B08733DD80010E9CD /* Release */,
);
defaultConfigurationIsVisible = 0;
- defaultConfigurationName = Release;
+ defaultConfigurationName = Debug;
};
/* End XCConfigurationList section */
};
projects / mothur.git / blobdiff