added mpi code to cluster.split command

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 2084dc5fffb240afa30d8f790448006fc0b0d814..6e28507e7faca5dba63e780f5b7d212b7715da3d 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -7,10 +7,25 @@
        objects = {
 
 /* Begin PBXFileReference section */
+               7EC61A0911BEA6AF00F668D9 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = "<group>"; };
+               A703FE931194645F002C397E /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makegroupcommand.h; sourceTree = SOURCE_ROOT; };
+               A703FE941194645F002C397E /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makegroupcommand.cpp; sourceTree = SOURCE_ROOT; };
+               A7118EE511CFCAC000CFDE03 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = degapseqscommand.h; sourceTree = "<group>"; };
+               A7118EE611CFCAC000CFDE03 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = degapseqscommand.cpp; sourceTree = "<group>"; };
+               A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrelabundcommand.h; sourceTree = "<group>"; };
+               A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrelabundcommand.cpp; sourceTree = "<group>"; };
+               A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustersplitcommand.cpp; sourceTree = "<group>"; };
+               A71D924311AEB42400D00CBC /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustersplitcommand.h; sourceTree = "<group>"; };
+               A71D924411AEB42400D00CBC /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitabundcommand.cpp; sourceTree = "<group>"; };
+               A71D924511AEB42400D00CBC /* splitabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitabundcommand.h; sourceTree = "<group>"; };
+               A71D924611AEB42400D00CBC /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitmatrix.cpp; sourceTree = "<group>"; };
+               A71D924711AEB42400D00CBC /* splitmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitmatrix.h; sourceTree = "<group>"; };
                A72B3A62118B37FD004B9F8D /* phylodiversitycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversitycommand.h; sourceTree = "<group>"; };
                A72B3A63118B37FD004B9F8D /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversitycommand.cpp; sourceTree = "<group>"; };
                A72B3A7B118B4D1B004B9F8D /* phylodiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversity.h; sourceTree = "<group>"; };
                A72B3A7C118B4D1B004B9F8D /* phylodiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversity.cpp; sourceTree = "<group>"; };
+               A73953DA11987ED100B0B160 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chopseqscommand.h; sourceTree = "<group>"; };
+               A73953DB11987ED100B0B160 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chopseqscommand.cpp; sourceTree = "<group>"; };
                A747E79B1163442A00FB9042 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckcommand.h; sourceTree = "<group>"; };
                A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckcommand.cpp; sourceTree = "<group>"; };
                A747E81C116365E000FB9042 /* chimeraslayercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraslayercommand.h; sourceTree = "<group>"; };
@@ -26,6 +41,12 @@
                A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerabellerophoncommand.cpp; sourceTree = "<group>"; };
                A78434881162224F00100BE0 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraccodecommand.h; sourceTree = "<group>"; };
                A78434891162224F00100BE0 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraccodecommand.cpp; sourceTree = "<group>"; };
+               A7BBDA7B11B5694E006E6551 /* classifyotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyotucommand.h; sourceTree = "<group>"; };
+               A7BBDA7C11B5694E006E6551 /* classifyotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyotucommand.cpp; sourceTree = "<group>"; };
+               A7D215C811996C6E00F13F13 /* clearcutcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clearcutcommand.h; sourceTree = "<group>"; };
+               A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearcutcommand.cpp; sourceTree = "<group>"; };
+               A7D216061199C47F00F13F13 /* catchallcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = catchallcommand.h; sourceTree = "<group>"; };
+               A7D216071199C47F00F13F13 /* catchallcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = catchallcommand.cpp; sourceTree = "<group>"; };
                A7DA1FEC113FECD400BF472F /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
                A7DA1FED113FECD400BF472F /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
                A7DA1FEE113FECD400BF472F /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = "<group>"; };
@@ -624,6 +645,7 @@
                                A7DA2170113FECD400BF472F /* uvest.h */,
                                A7DA2179113FECD400BF472F /* weighted.cpp */,
                                A7DA217A113FECD400BF472F /* weighted.h */,
+                               7EC61A0911BEA6AF00F668D9 /* weightedlinkage.cpp */,
                                A7DA217B113FECD400BF472F /* whittaker.cpp */,
                                A7DA217C113FECD400BF472F /* whittaker.h */,
                        );
@@ -636,10 +658,12 @@
                                A7DA202B113FECD400BF472F /* command.hpp */,
                                A7DA1FEF113FECD400BF472F /* aligncommand.h */,
                                A7DA1FEE113FECD400BF472F /* aligncommand.cpp */,
-                               A7DA1FFD113FECD400BF472F /* binsequencecommand.cpp */,
                                A7DA1FFE113FECD400BF472F /* binsequencecommand.h */,
+                               A7DA1FFD113FECD400BF472F /* binsequencecommand.cpp */,
                                A7DA2007113FECD400BF472F /* bootstrapsharedcommand.cpp */,
                                A7DA2008113FECD400BF472F /* bootstrapsharedcommand.h */,
+                               A7D216061199C47F00F13F13 /* catchallcommand.h */,
+                               A7D216071199C47F00F13F13 /* catchallcommand.cpp */,
                                A7DA2017113FECD400BF472F /* chimeraseqscommand.cpp */,
                                A7DA2018113FECD400BF472F /* chimeraseqscommand.h */,
                                A7825502116519F70002E2DD /* chimerabellerophoncommand.h */,
@@ -652,16 +676,26 @@
                                A78254471164D7790002E2DD /* chimerapintailcommand.cpp */,
                                A747E81C116365E000FB9042 /* chimeraslayercommand.h */,
                                A747E81D116365E000FB9042 /* chimeraslayercommand.cpp */,
-                               A7DA201D113FECD400BF472F /* classifyseqscommand.cpp */,
+                               A73953DA11987ED100B0B160 /* chopseqscommand.h */,
+                               A73953DB11987ED100B0B160 /* chopseqscommand.cpp */,
                                A7DA201E113FECD400BF472F /* classifyseqscommand.h */,
+                               A7DA201D113FECD400BF472F /* classifyseqscommand.cpp */,
+                               A7BBDA7B11B5694E006E6551 /* classifyotucommand.h */,
+                               A7BBDA7C11B5694E006E6551 /* classifyotucommand.cpp */,
+                               A7D215C811996C6E00F13F13 /* clearcutcommand.h */,
+                               A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */,
                                A7DA2021113FECD400BF472F /* clustercommand.cpp */,
                                A7DA2022113FECD400BF472F /* clustercommand.h */,
+                               A71D924311AEB42400D00CBC /* clustersplitcommand.h */,
+                               A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */,
                                A7DA2025113FECD400BF472F /* collectcommand.cpp */,
                                A7DA2026113FECD400BF472F /* collectcommand.h */,
                                A7DA2029113FECD400BF472F /* collectsharedcommand.cpp */,
                                A7DA202A113FECD400BF472F /* collectsharedcommand.h */,
                                A7DA2031113FECD400BF472F /* consensuscommand.cpp */,
                                A7DA2032113FECD400BF472F /* consensuscommand.h */,
+                               A7118EE511CFCAC000CFDE03 /* degapseqscommand.h */,
+                               A7118EE611CFCAC000CFDE03 /* degapseqscommand.cpp */,
                                A7DA203A113FECD400BF472F /* deconvolutecommand.cpp */,
                                A7DA203B113FECD400BF472F /* deconvolutecommand.h */,
                                A7DA203E113FECD400BF472F /* distancecommand.cpp */,
@@ -672,16 +706,18 @@
                                A7DA205B113FECD400BF472F /* getgroupcommand.h */,
                                A7DA205C113FECD400BF472F /* getlabelcommand.cpp */,
                                A7DA205D113FECD400BF472F /* getlabelcommand.h */,
-                               A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */,
                                A7DA205F113FECD400BF472F /* getlistcountcommand.h */,
-                               A7DA2060113FECD400BF472F /* getoturepcommand.cpp */,
+                               A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */,
                                A7DA2061113FECD400BF472F /* getoturepcommand.h */,
+                               A7DA2060113FECD400BF472F /* getoturepcommand.cpp */,
                                A7DA2062113FECD400BF472F /* getrabundcommand.cpp */,
                                A7DA2063113FECD400BF472F /* getrabundcommand.h */,
+                               A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */,
+                               A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */,
                                A7DA2064113FECD400BF472F /* getsabundcommand.cpp */,
                                A7DA2065113FECD400BF472F /* getsabundcommand.h */,
-                               A7DA2066113FECD400BF472F /* getseqscommand.cpp */,
                                A7DA2067113FECD400BF472F /* getseqscommand.h */,
+                               A7DA2066113FECD400BF472F /* getseqscommand.cpp */,
                                A7DA2068113FECD400BF472F /* getsharedotucommand.cpp */,
                                A7DA2069113FECD400BF472F /* getsharedotucommand.h */,
                                A7DA2074113FECD400BF472F /* hclustercommand.cpp */,
@@ -694,8 +730,10 @@
                                A7DA207F113FECD400BF472F /* helpcommand.h */,
                                A7DA208D113FECD400BF472F /* libshuffcommand.cpp */,
                                A7DA208E113FECD400BF472F /* libshuffcommand.h */,
-                               A7DA208F113FECD400BF472F /* listseqscommand.cpp */,
                                A7DA2090113FECD400BF472F /* listseqscommand.h */,
+                               A7DA208F113FECD400BF472F /* listseqscommand.cpp */,
+                               A703FE931194645F002C397E /* makegroupcommand.h */,
+                               A703FE941194645F002C397E /* makegroupcommand.cpp */,
                                A7DA2098113FECD400BF472F /* matrixoutputcommand.cpp */,
                                A7DA2099113FECD400BF472F /* matrixoutputcommand.h */,
                                A7DA209A113FECD400BF472F /* mergefilecommand.cpp */,
@@ -748,6 +786,8 @@
                                A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */,
                                A7DA2110113FECD400BF472F /* sharedcommand.h */,
                                A7DA210F113FECD400BF472F /* sharedcommand.cpp */,
+                               A71D924511AEB42400D00CBC /* splitabundcommand.h */,
+                               A71D924411AEB42400D00CBC /* splitabundcommand.cpp */,
                                A7DA2155113FECD400BF472F /* summarycommand.h */,
                                A7DA2154113FECD400BF472F /* summarycommand.cpp */,
                                A7DA2159113FECD400BF472F /* summarysharedcommand.h */,
@@ -899,6 +939,8 @@
                                A7DA20ED113FECD400BF472F /* readphylip.h */,
                                A7DA20EE113FECD400BF472F /* readtree.cpp */,
                                A7DA20EF113FECD400BF472F /* readtree.h */,
+                               A71D924711AEB42400D00CBC /* splitmatrix.h */,
+                               A71D924611AEB42400D00CBC /* splitmatrix.cpp */,
                        );
                        name = read;
                        sourceTree = "<group>";
@@ -926,6 +968,7 @@
                        isa = PBXProject;
                        attributes = {
                                BuildIndependentTargetsInParallel = YES;
+                               ORGANIZATIONNAME = "Schloss Lab";
                        };
                        buildConfigurationList = 1DEB919308733D9F0010E9CD /* Build configuration list for PBXProject "Mothur" */;
                        compatibilityVersion = "Xcode 3.0";
@@ -963,7 +1006,7 @@
                                GCC_WARN_UNUSED_VARIABLE = YES;
                                LINK_WITH_STANDARD_LIBRARIES = YES;
                                PREBINDING = NO;
-                               SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
+                               SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.6.sdk";
                        };
                        name = Release;
                };