added make.lefse command. fixed bug in make.contigs with trimming reverse barcodes...

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 77cfb8c6cd50b9ec16746ef64d16f142be6fb8dc..60a929d4ac7ce6ab268e31344e38bedcc20b65f8 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -20,6 +20,7 @@
                A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; };
                A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
                A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
+               A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */; };
                A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71CB15E130B04A2001E7287 /* anosimcommand.cpp */; };
                A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */; };
                A721765713BB9F7D0014DAAE /* referencedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721765613BB9F7D0014DAAE /* referencedb.cpp */; };
@@ -36,6 +37,7 @@
                A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */; };
                A73DDBBA13C4A0D1006AAE38 /* clearmemorycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */; };
                A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
+               A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; };
                A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
                A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; };
                A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; };
@@ -417,6 +419,8 @@
                A713EBAB12DC7613000092AC /* readphylipvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylipvector.cpp; sourceTree = "<group>"; };
                A713EBEB12DC7C5E000092AC /* nmdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nmdscommand.h; sourceTree = "<group>"; };
                A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nmdscommand.cpp; sourceTree = "<group>"; };
+               A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = lefsecommand.cpp; sourceTree = "<group>"; };
+               A7190B211768E0DF00A9AFA6 /* lefsecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = lefsecommand.h; sourceTree = "<group>"; };
                A71CB15E130B04A2001E7287 /* anosimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = anosimcommand.cpp; sourceTree = "<group>"; };
                A71CB15F130B04A2001E7287 /* anosimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = anosimcommand.h; sourceTree = "<group>"; };
                A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergegroupscommand.h; sourceTree = "<group>"; };
@@ -452,6 +456,8 @@
                A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearmemorycommand.cpp; sourceTree = "<group>"; };
                A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurmetastats.h; sourceTree = "<group>"; };
                A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurmetastats.cpp; sourceTree = "<group>"; };
+               A741744A175CD9B1007DF49B /* makelefsecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makelefsecommand.cpp; sourceTree = "<group>"; };
+               A741744B175CD9B1007DF49B /* makelefsecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makelefsecommand.h; sourceTree = "<group>"; };
                A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencecountparser.cpp; sourceTree = "<group>"; };
                A741FAD415D168A00067BCC5 /* sequencecountparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencecountparser.h; sourceTree = "<group>"; };
                A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kruskalwalliscommand.cpp; sourceTree = "<group>"; };
@@ -1399,8 +1405,6 @@
                                A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */,
                                A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */,
                                A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */,
-                               A70056E8156A93E300924A2D /* getotulabelscommand.h */,
-                               A70056E5156A93D000924A2D /* getotulabelscommand.cpp */,
                                A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */,
                                A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */,
                                A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */,
@@ -1409,6 +1413,8 @@
                                A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */,
                                A7E9B70112D37EC400DA6239 /* getotuscommand.h */,
                                A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */,
+                               A70056E8156A93E300924A2D /* getotulabelscommand.h */,
+                               A70056E5156A93D000924A2D /* getotulabelscommand.cpp */,
                                A7E9B70312D37EC400DA6239 /* getrabundcommand.h */,
                                A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */,
                                A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */,
@@ -1433,6 +1439,8 @@
                                A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
                                A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */,
                                A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */,
+                               A7190B211768E0DF00A9AFA6 /* lefsecommand.h */,
+                               A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */,
                                A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
                                A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
                                A7A0671C156294810095C8C5 /* listotulabelscommand.h */,
@@ -1451,6 +1459,8 @@
                                A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
                                A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
                                A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
+                               A741744B175CD9B1007DF49B /* makelefsecommand.h */,
+                               A741744A175CD9B1007DF49B /* makelefsecommand.cpp */,
                                A7E6F69C17427CF2006775E2 /* makelookupcommand.h */,
                                A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */,
                                A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */,
@@ -2370,6 +2380,8 @@
                                A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */,
                                A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */,
                                A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */,
+                               A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */,
+                               A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };