added get.rabund and get.sabund command and fixed bug introduced by line by line...

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 245ed5535ecc449999a20ae363a09cd4d90b6037..34dacfaa1bd701ec3387bb3faf3073b88cd3493e 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -35,6 +35,8 @@
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                3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
+               3749271D0FD58C840031C06B /* getsabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3749271C0FD58C840031C06B /* getsabundcommand.cpp */; };
+               3749273F0FD5956B0031C06B /* getrabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3749273E0FD5956B0031C06B /* getrabundcommand.cpp */; };
                37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */; };
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                37519AB50F810FAE00FED5E8 /* venn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37519AB40F810FAE00FED5E8 /* venn.cpp */; };
@@ -67,6 +69,8 @@
                379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3792946F0F2E191800B9034A /* parsimonycommand.cpp */; };
                3792948A0F2E258500B9034A /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379294890F2E258500B9034A /* parsimony.cpp */; };
                379643ED0FB9B5A80081FDB6 /* readseqs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379643EB0FB9B5A80081FDB6 /* readseqs.cpp */; };
+               3799A9500FD6A58C00E33EDE /* distancedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3799A94C0FD6A58C00E33EDE /* distancedb.cpp */; };
+               3799A9510FD6A58C00E33EDE /* seqsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3799A94E0FD6A58C00E33EDE /* seqsummarycommand.cpp */; };
                37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */; };
                37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */; };
                37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */; };
@@ -145,7 +149,6 @@
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                7E412FEA0F8D3E2C00381DD0 /* libshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E412FE90F8D3E2C00381DD0 /* libshuff.cpp */; };
                7E4130F80F8E58FA00381DD0 /* dlibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E4130F60F8E58FA00381DD0 /* dlibshuff.cpp */; };
-               7E9214820FD2081200699BF3 /* seqsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E9214810FD2081200699BF3 /* seqsummarycommand.cpp */; };
                7EC3D4550FA0FFF900338DA5 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7EC3D4500FA0FFF900338DA5 /* coverage.cpp */; };
                7EC3D4560FA0FFF900338DA5 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7EC3D4530FA0FFF900338DA5 /* whittaker.cpp */; };
                8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6859E8B029090EE04C91782 /* Mothur.1 */; };
@@ -230,6 +233,10 @@
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+               3749271B0FD58C840031C06B /* getsabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsabundcommand.h; sourceTree = "<group>"; };
+               3749271C0FD58C840031C06B /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsabundcommand.cpp; sourceTree = "<group>"; };
+               3749273D0FD5956B0031C06B /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrabundcommand.h; sourceTree = "<group>"; };
+               3749273E0FD5956B0031C06B /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrabundcommand.cpp; sourceTree = "<group>"; };
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@@ -298,6 +305,10 @@
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+               3799A94D0FD6A58C00E33EDE /* distancedb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = distancedb.hpp; sourceTree = "<group>"; };
+               3799A94E0FD6A58C00E33EDE /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqsummarycommand.cpp; sourceTree = "<group>"; };
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@@ -469,8 +480,6 @@
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-               7E9214800FD2081200699BF3 /* seqsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqsummarycommand.h; sourceTree = "<group>"; };
-               7E9214810FD2081200699BF3 /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqsummarycommand.cpp; sourceTree = "<group>"; };
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                7EC3D4520FA0FFF900338DA5 /* sharedanderberg.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderberg.h; sourceTree = SOURCE_ROOT; };
@@ -747,8 +756,6 @@
                37D928A90F2133E5001D4494 /* commands */ = {
                        isa = PBXGroup;
                        children = (
-                               7E9214800FD2081200699BF3 /* seqsummarycommand.h */,
-                               7E9214810FD2081200699BF3 /* seqsummarycommand.cpp */,
                                37D927CD0F21331F001D4494 /* command.hpp */,
                                378DC5CD0FBDE1C8003B8607 /* aligncommand.h */,
                                378DC5CE0FBDE1C8003B8607 /* aligncommand.cpp */,
@@ -778,6 +785,10 @@
                                A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
                                370B88050F8A4EE4005AB382 /* getoturepcommand.h */,
                                370B88060F8A4EE4005AB382 /* getoturepcommand.cpp */,
+                               3749273D0FD5956B0031C06B /* getrabundcommand.h */,
+                               3749273E0FD5956B0031C06B /* getrabundcommand.cpp */,
+                               3749271B0FD58C840031C06B /* getsabundcommand.h */,
+                               3749271C0FD58C840031C06B /* getsabundcommand.cpp */,
                                375873F10F7D64800040F377 /* heatmapcommand.h */,
                                375873F00F7D64800040F377 /* heatmapcommand.cpp */,
                                37D927E40F21331F001D4494 /* helpcommand.h */,
@@ -804,6 +815,8 @@
                                372E126F0F26365B0095CF7E /* readotucommand.cpp */,
                                37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
                                37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
+                               3799A94E0FD6A58C00E33EDE /* seqsummarycommand.cpp */,
+                               3799A94F0FD6A58C00E33EDE /* seqsummarycommand.h */,
                                37D928270F21331F001D4494 /* sharedcommand.h */,
                                37D928260F21331F001D4494 /* sharedcommand.cpp */,
                                37D928470F21331F001D4494 /* summarycommand.h */,
@@ -834,6 +847,8 @@
                                37D927D40F21331F001D4494 /* database.hpp */,
                                37D927D30F21331F001D4494 /* database.cpp */,
                                37D927D50F21331F001D4494 /* datavector.hpp */,
+                               3799A94C0FD6A58C00E33EDE /* distancedb.cpp */,
+                               3799A94D0FD6A58C00E33EDE /* distancedb.hpp */,
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                                37D927DB0F21331F001D4494 /* fastamap.cpp */,
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@@ -1098,7 +1113,10 @@
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                                EB72FE260FC1F5CA0051AC11 /* shen.cpp in Sources */,
                                21E859D80FC4632E005E1A48 /* matrixoutputcommand.cpp in Sources */,
-                               7E9214820FD2081200699BF3 /* seqsummarycommand.cpp in Sources */,
+                               3749271D0FD58C840031C06B /* getsabundcommand.cpp in Sources */,
+                               3749273F0FD5956B0031C06B /* getrabundcommand.cpp in Sources */,
+                               3799A9500FD6A58C00E33EDE /* distancedb.cpp in Sources */,
+                               3799A9510FD6A58C00E33EDE /* seqsummarycommand.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };