systemcommand.h

   1 #ifndef SYSTEMCOMMAND_H
   2 #define SYSTEMCOMMAND_H
   3
   4 /*
   5  *  systemcommand.h
   6  *  Mothur
   7  *
   8  *  Created by Sarah Westcott on 7/8/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14
  15
  16 class SystemCommand : public Command {
  17
  18         public:
  19
  20                 SystemCommand(string);
  21                 SystemCommand() { setParameters(); abort = true; calledHelp = true; }
  22                 ~SystemCommand(){}
  23
  24                 vector<string> setParameters();
  25                 string getCommandName()                 { return "system";              }
  26                 string getCommandCategory()             { return "General";             }
  27                 string getHelpString();
  28
  29                 int execute();
  30                 void help() { m->mothurOut(getHelpString()); }
  31
  32         private:
  33                 string command;
  34                 bool abort;
  35                 vector<string> outputNames;
  36
  37
  38 };
  39
  40 #endif
  41