strictchi2.cpp

   1 /*
   2  *  strictchi2.cpp
   3  *  Mothur
   4  *
   5  *  Created by westcott on 12/17/10.
   6  *  Copyright 2010 Schloss Lab. All rights reserved.
   7  *
   8  */
   9
  10 #include "strictchi2.h"
  11
  12 /***********************************************************************/
  13 EstOutput StrictChi2::getValues(vector<SharedRAbundVector*> shared) {
  14         try {
  15                 data.resize(1,0);
  16
  17                 double sumA = shared[0]->getNumSeqs();
  18                 double sumB = shared[1]->getNumSeqs();
  19                 double totalSum = 0.0;
  20
  21                 for (int i = 0; i < shared.size(); i++) { totalSum += shared[i]->getNumSeqs();  }
  22
  23                 vector<int> sumOtus; sumOtus.resize(shared[0]->getNumBins(), 0);
  24                 //for each otu
  25                 for (int i = 0; i < shared[0]->getNumBins(); i++) {
  26                         //for each group
  27                         for (int j = 0; j < shared.size(); j++) {
  28
  29                         }
  30                 }
  31
  32
  33
  34                 //data[0] = sqrt(sum);
  35
  36                 if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
  37
  38                 return data;
  39         }
  40         catch(exception& e) {
  41                 m->errorOut(e, "StrictChi2", "getValues");
  42                 exit(1);
  43         }
  44 }
  45 /***********************************************************************/