shared.h

   1 #ifndef SHARED_H
   2 #define SHARED_H
   3
   4 /*
   5  *  shared.h
   6  *  Dotur
   7  *
   8  *  Created by Sarah Westcott on 12/5/08.
   9  *  Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 using namespace std;
  14
  15 #include <iostream>
  16 #include <fstream>
  17 #include <iomanip>
  18 #include <vector>
  19 #include <string>
  20 #include <sstream>
  21 #include <map>
  22 #include "sharedrabundvector.h"
  23 #include "sharedlistvector.h"
  24 #include "globaldata.hpp"
  25
  26 class Shared {
  27         public:
  28                 Shared();
  29                 ~Shared();
  30                 void getSharedVectors(int, SharedListVector*);
  31                 map<string, SharedRAbundVector*> sharedGroups; //string is groupname, SharedVector* is out info for that group
  32
  33         private:
  34                 GlobalData* globaldata;
  35                 void parse(int, SharedListVector*);
  36                 vector< map<string, SharedRAbundVector*> > sharedRAbund;  //contains all the info needed to create the .shared file not sure if we will need
  37 };
  38
  39 #endif