1 #ifndef SETCURRENTCOMMAND_H
2 #define SETCURRENTCOMMAND_H
8 * Created by westcott on 3/16/11.
9 * Copyright 2011 Schloss Lab. All rights reserved.
14 #include "command.hpp"
16 class SetCurrentCommand : public Command {
19 SetCurrentCommand(string);
22 vector<string> getRequiredParameters();
23 vector<string> getValidParameters();
24 vector<string> getRequiredFiles();
25 map<string, vector<string> > getOutputFiles() { return outputTypes; }
31 vector<string> outputNames;
32 map<string, vector<string> > outputTypes;
38 string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile;
39 string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile;