readsharedcommand.h

   1 #ifndef READSHAREDCOMMAND_H
   2 #define READSHAREDCOMMAND_H
   3 /*
   4  *  readsharedcommand.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 2/12/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11 #include <iostream>
  12 #include <fstream>
  13 #include "command.hpp"
  14 #include "readmatrix.hpp"
  15 #include "inputdata.h"
  16
  17 /* The read.shared must be run before you execute a collect.shared, rarefaction.shared or summary.shared command.
  18 The read.shared command is used to read a shared file. The read.shared should be entered in the following format:
  19 read.shared(shared=yourSharedFile). The shared parameter is required.  */
  20
  21 class GlobalData;
  22
  23 class ReadSharedCommand : public Command {
  24 public:
  25         ReadSharedCommand();
  26         ~ReadSharedCommand();
  27         int execute();
  28
  29 private:
  30         GlobalData* globaldata;
  31         ReadMatrix* read;
  32         InputData* input;
  33         string filename;
  34 };
  35
  36 #endif
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