readseqsphylip.h

   1 #ifndef READPHYLIP_H
   2 #define READPHYLIP_H
   3
   4 /*
   5  *  readphylip.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 4/24/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12 using namespace std;
  13
  14 #include "globaldata.hpp"
  15 #include "sequencedb.h"
  16 #include "mothur.h"
  17
  18 /**********************************************************************************/
  19
  20 class ReadPhylip {
  21
  22         public:
  23                 ReadPhylip(string);
  24                 ~ReadPhylip();
  25                 void read();
  26                 SequenceDB* getDB();
  27
  28         private:
  29                 GlobalData* globaldata;
  30                 string phylipFile;
  31                 ifstream filehandle;
  32                 SequenceDB sequencedb;
  33                 int readOk; // readOk = 0 means success, readOk = 1 means error(s).
  34
  35                 bool isSeq(string);
  36 };
  37
  38 #endif