readseqs.h

   1 #ifndef READSEQS_H
   2 #define READSEQS_H
   3
   4 /*
   5  *  readseqs.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 5/11/09.
   9  *  Copyright 2009Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "globaldata.hpp"
  14 #include "sequencedb.h"
  15 #include "mothur.h"
  16
  17 /**********************************************************************************/
  18
  19 class ReadSeqs {
  20
  21         public:
  22                 ReadSeqs(string);
  23                 ~ReadSeqs();
  24                 virtual void read();
  25                 virtual SequenceDB* getDB();
  26
  27         protected:
  28                 GlobalData* globaldata;
  29                 string seqFile;
  30                 ifstream filehandle;
  31                 SequenceDB sequencedb;
  32                 int readOk; // readOk = 0 means success, readOk = 1 means error(s).
  33 };
  34
  35 #endif