readseqs.cpp

   1 /*
   2  *  readseqs.cpp
   3  *  Mothur
   4  *
   5  *  Created by Thomas Ryabin on 5/11/09.
   6  *  Copyright 2009 __MyCompanyName__. All rights reserved.
   7  *
   8  */
   9
  10 #include "readseqs.h"
  11 #include <iostream>
  12 #include <fstream>
  13
  14
  15 /*******************************************************************************/
  16 ReadSeqs::ReadSeqs(string file) {
  17         try {
  18                 openInputFile(file, filehandle);
  19                 seqFile = file;
  20                 globaldata = GlobalData::getInstance();
  21         }
  22         catch(exception& e) {
  23                 cout << "Standard Error: " << e.what() << " has occurred in the ReadTree class Function ReadTree. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  24                 exit(1);
  25         }
  26         catch(...) {
  27                 cout << "An unknown error has occurred in the ReadTree class function ReadTree. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  28                 exit(1);
  29         }
  30 }
  31 /*******************************************************************************/
  32 ReadSeqs::~ReadSeqs(){
  33         //for(int i = 0; i < sequencedb.getNumSeqs(); i++)
  34                 //delete sequencedb.get(i);
  35 }
  36 /*******************************************************************************/
  37 void ReadSeqs::read() {
  38 }
  39
  40 /*********************************************************************************/
  41 SequenceDB* ReadSeqs::getDB() {
  42         return &sequencedb;
  43 }