readotu.h

   1 #ifndef READOTU_H
   2 #define READOTU_H
   3 /*
   4  *  readotu.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 4/21/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12
  13
  14 #include "rabundvector.hpp"
  15 #include "listvector.hpp"
  16 #include "sharedlistvector.h"
  17 #include "inputdata.h"
  18 #include "globaldata.hpp"
  19 #include "sabundvector.hpp"
  20 #include "groupmap.h"
  21
  22
  23 class ReadOTUFile {
  24
  25 public:
  26         ReadOTUFile(string);
  27         ~ReadOTUFile();
  28         void read(GlobalData* globaldata);
  29 private:
  30         ifstream fileHandle;
  31         string philFile;
  32         InputData* input;
  33         InputData* inputSabund;
  34         InputData* inputList;
  35         ListVector* list;
  36         SharedListVector* SharedList;
  37         OrderVector* order;
  38         SAbundVector* sabund;
  39         GlobalData* globaldata;
  40         // InputData* getInput()                        {       return input;   }
  41 };
  42
  43
  44 #endif