readfasta.h

   1 #ifndef READFASTA_H
   2 #define READFASTA_H
   3
   4 /*
   5  *  readfasta.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 4/21/09.
   9  *  Copyright 2009 __MyCompanyName__. All rights reserved.
  10  *
  11  */
  12
  13 using namespace std;
  14
  15 #include "globaldata.hpp"
  16 #include "sequencedb.h"
  17 #include "mothur.h"
  18
  19 /**********************************************************************************/
  20
  21 class ReadFasta {
  22
  23         public:
  24                 ReadFasta(string);
  25                 ~ReadFasta();
  26                 void read();
  27                 SequenceDB* getDB();
  28
  29         private:
  30                 GlobalData* globaldata;
  31                 string fastaFile;
  32                 ifstream filehandle;
  33                 SequenceDB sequencedb;
  34                 int readOk; // readOk = 0 means success, readOk = 1 means error(s).
  35
  36
  37 };
  38
  39 #endif