getlabelcommand.h

   1 #ifndef GETLABELCOMMAND_H
   2 #define GETLABELCOMMAND_H
   3
   4 /*
   5  *  getlabelcommand.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 1/30/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14 #include "readmatrix.hpp"
  15
  16 class GlobalData;
  17
  18 class GetlabelCommand : public Command {
  19 public:
  20         GetlabelCommand(string);
  21         GetlabelCommand(){}
  22         ~GetlabelCommand();
  23         vector<string> getRequiredParameters();
  24         vector<string> getValidParameters();
  25         vector<string> getRequiredFiles();
  26         map<string, vector<string> > getOutputFiles() { return outputTypes; }
  27         int execute();
  28         void help();
  29
  30 private:
  31         GlobalData* globaldata;
  32         string filename;
  33         bool abort;
  34         vector<string> outputNames;
  35         map<string, vector<string> > outputTypes;
  36 };
  37
  38 #endif