flowdata.h

   1 #ifndef FLOWDATA_H
   2 #define FLOWDATA_H
   3
   4 /*
   5  *  flowdata.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 12/22/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "mothurout.h"
  15 #include "sequence.hpp"
  16
  17 class FlowData {
  18
  19 public:
  20         FlowData();
  21         FlowData(ifstream&, float, float, int);
  22         ~FlowData(){};
  23         void capFlows(int);
  24         bool hasMinFlows(int);
  25         Sequence getSequence();
  26
  27         int getSeqLength();
  28         void printFlows(ofstream&);
  29         void printFlows(ofstream&, string);
  30         void printFASTA(ofstream&);
  31 private:
  32         MothurOut* m;
  33
  34         void findDeadSpot(float, float, int);
  35         void translateFlow();
  36
  37         string seqName, locationString, sequence, baseFlow;
  38         int numFlows, seqLength, deadSpot;
  39         vector<float> flowData;
  40 };
  41
  42 #endif