evalue.h

   1 //uchime by Robert C. Edgar http://drive5.com/uchime This code is donated to the public domain.\r
   2 \r
   3 #ifndef evalue_h\r
   4 #define evalue_h\r
   5 \r
   6 #include <float.h>\r
   7 \r
   8 void SetKarlin(double GappedLambda, double UngappedLambda,\r
   9   double GappedK, double UngappedK, double DBLength);\\r
  10 \r
  11 double GetKarlinDBLength();\r
  12 void SetKarlinDBLength(double DBLength);\r
  13 void LogKarlin();\r
  14 void SetKarlinAmino(double DBLength);\r
  15 void SetKarlinNucleo(double DBLength);\r
  16 void SetKarlin(double DBLength, bool Nucleo);\r
  17 double ComputeBitScoreGapped(double Score);\r
  18 double ComputeBitScoreUngapped(double Score);\r
  19 double ComputeEvalueGapped(double Score, unsigned QueryLength);\r
  20 double ComputeEvalueUngapped(double Score, unsigned QueryLength);\r
  21 double ComputeMinScoreGivenEvalueAGapped(double Evalue, unsigned Area);\r
  22 double ComputeMinScoreGivenEvalueAUngapped(double Evalue, unsigned Area);\r
  23 double ComputeMinScoreGivenEvalueQGapped(double Evalue, unsigned QueryLength);\r
  24 double ComputeMinScoreGivenEvalueQUngapped(double Evalue, unsigned QueryLength);\r
  25 double ComputeEvalueGappedFromBitScore(double BitScore, unsigned QueryLength);\r
  26 \r
  27 #endif // evalue_h\r