1 #ifndef DISTANCECOMMAND_H
2 #define DISTANCECOMMAND_H
8 * Created by Sarah Westcott on 5/7/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
14 #include "command.hpp"
15 #include "globaldata.hpp"
16 #include "validcalculator.h"
18 #include "sequencedb.h"
23 class DistanceCommand : public Command {
27 ~DistanceCommand() {};
31 GlobalData* globaldata;
32 ValidCalculators* validCalculator;
36 string outputFileName;
37 string ends, distFile;
41 int driver(Dist*, SequenceDB*, int, int, string, float);