coverage.cpp

   1 /*
   2  *  coverage.cpp
   3  *  Mothur
   4  *
   5  *  Created by Sarah Westcott on 3/9/09.
   6  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   7  *
   8  */
   9
  10 #include "coverage.h"
  11
  12 //**********************************************************************************************************************
  13 vector< vector<float> > Coverage::getValues(FullMatrix*, float) {
  14         try {
  15                 globaldata = GlobalData::getInstance();
  16                 numGroups = globaldata->Groups.size();
  17
  18                 //initialize data
  19                 data.resize(numGroups);
  20                 for (int l = 0; l < data.size(); l++) {
  21                         data[l].push_back(0.0);
  22                 }
  23
  24                 /**************************************/
  25                 //get the minumums for each comparision
  26                 /**************************************/
  27                 return data;
  28         }
  29         catch(exception& e) {
  30                 cout << "Standard Error: " << e.what() << " has occurred in the Coverage class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  31                 exit(1);
  32         }
  33         catch(...) {
  34                 cout << "An unknown error has occurred in the Coverage class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  35                 exit(1);
  36         }
  37 }
  38 //**********************************************************************************************************************
  39
  40