1 #ifndef CHIMERASLAYER_H
2 #define CHIMERASLAYER_H
8 * Created by westcott on 9/25/09.
9 * Copyright 2009 Schloss Lab. All rights reserved.
18 /***********************************************************************/
19 //This class was modeled after the chimeraSlayer written by the Broad Institute
20 /***********************************************************************/
23 class ChimeraSlayer : public Chimera {
26 ChimeraSlayer(string, string);
32 void setCons(string){};
33 void setQuantiles(string q) {};
40 vector<linePair*> lines;
41 vector<Sequence*> querySeqs;
42 vector<Sequence*> templateSeqs;
44 string fastafile, templateFile;
46 Sequence* getSequence(string); //find sequence from name
51 /************************************************************************/