chimeraseqscommand.h

   1 #ifndef CHIMERACOMMAND_H
   2 #define CHIMERACOMMAND_H
   3
   4 /*
   5  *  chimeraseqscommand.h
   6  *  Mothur
   7  *
   8  *  Created by Sarah Westcott on 6/29/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "command.hpp"
  15
  16 /***********************************************************/
  17
  18 class ChimeraSeqsCommand : public Command {
  19 public:
  20         ChimeraSeqsCommand(string);
  21         ChimeraSeqsCommand() {}
  22         ~ChimeraSeqsCommand();
  23         vector<string> getRequiredParameters();
  24         vector<string> getValidParameters();
  25         vector<string> getRequiredFiles();
  26         map< string, vector<string> > getOutputFiles() { return outputTypes; }
  27         int execute();
  28         void help();
  29
  30
  31 private:
  32         vector<string> outputNames;
  33         map< string, vector<string> > outputTypes;
  34
  35 };
  36
  37 /***********************************************************/
  38
  39 #endif
  40