Mothur.xcodeproj/project.pbxproj

   1 // !$*UTF8*$!
   2 {
   3         archiveVersion = 1;
   4         classes = {
   5         };
   6         objectVersion = 44;
   7         objects = {
   8
   9 /* Begin PBXBuildFile section */
  10                 370B88070F8A4EE4005AB382 /* getoturepcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 370B88060F8A4EE4005AB382 /* getoturepcommand.cpp */; };
  11                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E126F0F26365B0095CF7E /* readotucommand.cpp */; };
  12                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12950F263D5A0095CF7E /* readdistcommand.cpp */; };
  13                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12EC0F264D320095CF7E /* commandfactory.cpp */; };
  14                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610770F40645300460C57 /* unifracweightedcommand.cpp */; };
  15                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; };
  16                 374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; };
  17                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
  18                 37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */; };
  19                 37519AA10F810D0200FED5E8 /* venncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37519AA00F810D0200FED5E8 /* venncommand.cpp */; };
  20                 37519AB50F810FAE00FED5E8 /* venn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37519AB40F810FAE00FED5E8 /* venn.cpp */; };
  21                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EB0F7D64520040F377 /* fullmatrix.cpp */; };
  22                 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EE0F7D646F0040F377 /* heatmap.cpp */; };
  23                 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F00F7D64800040F377 /* heatmapcommand.cpp */; };
  24                 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F30F7D648F0040F377 /* libshuffcommand.cpp */; };
  25                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873F60F7D649C0040F377 /* nocommands.cpp */; };
  26                 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */; };
  27                 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */; };
  28                 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */; };
  29                 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */; };
  30                 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */; };
  31                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */; };
  32                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379293C20F2DE73400B9034A /* treemap.cpp */; };
  33                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3792946F0F2E191800B9034A /* parsimonycommand.cpp */; };
  34                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379294890F2E258500B9034A /* parsimony.cpp */; };
  35                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */; };
  36                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */; };
  37                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */; };
  38                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */; };
  39                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37B28F670F27590100808A62 /* deconvolutecommand.cpp */; };
  40                 37C1D9730F86506E0059E3F0 /* binsequencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37C1D9720F86506E0059E3F0 /* binsequencecommand.cpp */; };
  41                 37D928550F21331F001D4494 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927B80F21331F001D4494 /* ace.cpp */; };
  42                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BA0F21331F001D4494 /* averagelinkage.cpp */; };
  43                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BB0F21331F001D4494 /* bootstrap.cpp */; };
  44                 37D928580F21331F001D4494 /* calculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BD0F21331F001D4494 /* calculator.cpp */; };
  45                 37D928590F21331F001D4494 /* chao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BF0F21331F001D4494 /* chao1.cpp */; };
  46                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C10F21331F001D4494 /* cluster.cpp */; };
  47                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C30F21331F001D4494 /* clustercommand.cpp */; };
  48                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C50F21331F001D4494 /* collect.cpp */; };
  49                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C70F21331F001D4494 /* collectcommand.cpp */; };
  50                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */; };
  51                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D00F21331F001D4494 /* commandoptionparser.cpp */; };
  52                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D20F21331F001D4494 /* completelinkage.cpp */; };
  53                 37D928620F21331F001D4494 /* database.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D30F21331F001D4494 /* database.cpp */; };
  54                 37D928630F21331F001D4494 /* engine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D70F21331F001D4494 /* engine.cpp */; };
  55                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D90F21331F001D4494 /* errorchecking.cpp */; };
  56                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DB0F21331F001D4494 /* fastamap.cpp */; };
  57                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DD0F21331F001D4494 /* fileoutput.cpp */; };
  58                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DF0F21331F001D4494 /* globaldata.cpp */; };
  59                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E10F21331F001D4494 /* groupmap.cpp */; };
  60                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E30F21331F001D4494 /* helpcommand.cpp */; };
  61                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E50F21331F001D4494 /* inputdata.cpp */; };
  62                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E70F21331F001D4494 /* jackknife.cpp */; };
  63                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E90F21331F001D4494 /* kmer.cpp */; };
  64                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EB0F21331F001D4494 /* kmerdb.cpp */; };
  65                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927ED0F21331F001D4494 /* listvector.cpp */; };
  66                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EF0F21331F001D4494 /* mothur.cpp */; };
  67                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F00F21331F001D4494 /* nameassignment.cpp */; };
  68                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F40F21331F001D4494 /* npshannon.cpp */; };
  69                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F70F21331F001D4494 /* ordervector.cpp */; };
  70                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F90F21331F001D4494 /* parselistcommand.cpp */; };
  71                 37D928750F21331F001D4494 /* progress.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FB0F21331F001D4494 /* progress.cpp */; };
  72                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FD0F21331F001D4494 /* quitcommand.cpp */; };
  73                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FF0F21331F001D4494 /* rabundvector.cpp */; };
  74                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928010F21331F001D4494 /* rarecalc.cpp */; };
  75                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928030F21331F001D4494 /* raredisplay.cpp */; };
  76                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928050F21331F001D4494 /* rarefact.cpp */; };
  77                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928070F21331F001D4494 /* rarefactcommand.cpp */; };
  78                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */; };
  79                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928120F21331F001D4494 /* readmatrix.cpp */; };
  80                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281A0F21331F001D4494 /* sabundvector.cpp */; };
  81                 37D928850F21331F001D4494 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281C0F21331F001D4494 /* sequence.cpp */; };
  82                 37D928860F21331F001D4494 /* shannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281E0F21331F001D4494 /* shannon.cpp */; };
  83                 37D928870F21331F001D4494 /* shared.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928200F21331F001D4494 /* shared.cpp */; };
  84                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928220F21331F001D4494 /* sharedace.cpp */; };
  85                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928240F21331F001D4494 /* sharedchao1.cpp */; };
  86                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928260F21331F001D4494 /* sharedcommand.cpp */; };
  87                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928280F21331F001D4494 /* sharedjabund.cpp */; };
  88                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282A0F21331F001D4494 /* sharedjclass.cpp */; };
  89                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282C0F21331F001D4494 /* sharedjest.cpp */; };
  90                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282E0F21331F001D4494 /* sharedordervector.cpp */; };
  91                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928300F21331F001D4494 /* sharedrabundvector.cpp */; };
  92                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928320F21331F001D4494 /* sharedsabundvector.cpp */; };
  93                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928340F21331F001D4494 /* sharedsobs.cpp */; };
  94                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928360F21331F001D4494 /* sharedsorabund.cpp */; };
  95                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928380F21331F001D4494 /* sharedsorclass.cpp */; };
  96                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283A0F21331F001D4494 /* sharedsorest.cpp */; };
  97                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283C0F21331F001D4494 /* sharedthetan.cpp */; };
  98                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */; };
  99                 37D928970F21331F001D4494 /* simpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928400F21331F001D4494 /* simpson.cpp */; };
 100                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928420F21331F001D4494 /* singlelinkage.cpp */; };
 101                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928440F21331F001D4494 /* sparsematrix.cpp */; };
 102                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928460F21331F001D4494 /* summarycommand.cpp */; };
 103                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */; };
 104                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284D0F21331F001D4494 /* uvest.cpp */; };
 105                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284F0F21331F001D4494 /* validcalculator.cpp */; };
 106                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928510F21331F001D4494 /* validcommands.cpp */; };
 107                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928530F21331F001D4494 /* validparameter.cpp */; };
 108                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F3E20F29FD4200F8D827 /* treenode.cpp */; };
 109                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */; };
 110                 7E412F490F8D21B600381DD0 /* slibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E412F480F8D21B600381DD0 /* slibshuff.cpp */; };
 111                 7E412FEA0F8D3E2C00381DD0 /* libshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E412FE90F8D3E2C00381DD0 /* libshuff.cpp */; };
 112                 7E4130F80F8E58FA00381DD0 /* dlibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E4130F60F8E58FA00381DD0 /* dlibshuff.cpp */; };
 113                 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6859E8B029090EE04C91782 /* Mothur.1 */; };
 114                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */; };
 115                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */; };
 116                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */; };
 117                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216870F619B83004A865F /* bergerparker.cpp */; };
 118                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216E40F61ACFB004A865F /* bstick.cpp */; };
 119                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1217220F61C9AC004A865F /* sharedkstest.cpp */; };
 120                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6E68180F5F1C780044E17B /* qstat.cpp */; };
 121                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */; };
 122                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303EA0F534D9400E8EF26 /* logsd.cpp */; };
 123                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303F80F53517300E8EF26 /* geom.cpp */; };
 124 /* End PBXBuildFile section */
 125
 126 /* Begin PBXCopyFilesBuildPhase section */
 127                 8DD76F690486A84900D96B5E /* CopyFiles */ = {
 128                         isa = PBXCopyFilesBuildPhase;
 129                         buildActionMask = 8;
 130                         dstPath = /usr/share/man/man1/;
 131                         dstSubfolderSpec = 0;
 132                         files = (
 133                                 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */,
 134                         );
 135                         runOnlyForDeploymentPostprocessing = 1;
 136                 };
 137 /* End PBXCopyFilesBuildPhase section */
 138
 139 /* Begin PBXFileReference section */
 140                 370B88050F8A4EE4005AB382 /* getoturepcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getoturepcommand.h; sourceTree = "<group>"; };
 141                 370B88060F8A4EE4005AB382 /* getoturepcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getoturepcommand.cpp; sourceTree = "<group>"; };
 142                 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
 143                 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
 144                 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
 145                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
 146                 372E12EC0F264D320095CF7E /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = "<group>"; };
 147                 374610760F40645300460C57 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
 148                 374610770F40645300460C57 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
 149                 3746107C0F4064D100460C57 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
 150                 3746107D0F4064D100460C57 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
 151                 374610810F40652400460C57 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
 152                 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
 153                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
 154                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
 155                 37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderbergs.h; sourceTree = "<group>"; };
 156                 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderbergs.cpp; sourceTree = "<group>"; };
 157                 37519A9F0F810D0200FED5E8 /* venncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venncommand.h; sourceTree = "<group>"; };
 158                 37519AA00F810D0200FED5E8 /* venncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venncommand.cpp; sourceTree = "<group>"; };
 159                 37519AB30F810FAE00FED5E8 /* venn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venn.h; sourceTree = "<group>"; };
 160                 37519AB40F810FAE00FED5E8 /* venn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venn.cpp; sourceTree = "<group>"; };
 161                 375873EA0F7D64520040F377 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
 162                 375873EB0F7D64520040F377 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
 163                 375873ED0F7D646F0040F377 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = "<group>"; };
 164                 375873EE0F7D646F0040F377 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = "<group>"; };
 165                 375873F00F7D64800040F377 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = "<group>"; };
 166                 375873F10F7D64800040F377 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = "<group>"; };
 167                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = "<group>"; };
 168                 375873F40F7D648F0040F377 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
 169                 375873F60F7D649C0040F377 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
 170                 375873F70F7D649C0040F377 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
 171                 375873F90F7D64AB0040F377 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
 172                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
 173                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
 174                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = "<group>"; };
 175                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlennon.cpp; sourceTree = "<group>"; };
 176                 375874000F7D64EF0040F377 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = "<group>"; };
 177                 375874010F7D64EF0040F377 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
 178                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
 179                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
 180                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
 181                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
 182                 375874090F7D64FC0040F377 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
 183                 3758740A0F7D64FC0040F377 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
 184                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
 185                 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
 186                 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
 187                 3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
 188                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
 189                 379294880F2E258500B9034A /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
 190                 379294890F2E258500B9034A /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
 191                 3792948D0F2E271100B9034A /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
 192                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
 193                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
 194                 37AD4DB90F28E2FE00AA2D49 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
 195                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
 196                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
 197                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
 198                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
 199                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
 200                 37B28F660F27590100808A62 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
 201                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
 202                 37C1D9710F86506E0059E3F0 /* binsequencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = binsequencecommand.h; sourceTree = "<group>"; };
 203                 37C1D9720F86506E0059E3F0 /* binsequencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = binsequencecommand.cpp; sourceTree = "<group>"; };
 204                 37D927B80F21331F001D4494 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
 205                 37D927B90F21331F001D4494 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
 206                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = "<group>"; };
 207                 37D927BB0F21331F001D4494 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
 208                 37D927BC0F21331F001D4494 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
 209                 37D927BD0F21331F001D4494 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
 210                 37D927BE0F21331F001D4494 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
 211                 37D927BF0F21331F001D4494 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
 212                 37D927C00F21331F001D4494 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
 213                 37D927C10F21331F001D4494 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
 214                 37D927C20F21331F001D4494 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
 215                 37D927C30F21331F001D4494 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
 216                 37D927C40F21331F001D4494 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
 217                 37D927C50F21331F001D4494 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = "<group>"; };
 218                 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
 219                 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
 220                 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
 221                 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
 222                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
 223                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
 224                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
 225                 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
 226                 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
 227                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
 228                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
 229                 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
 230                 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
 231                 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
 232                 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
 233                 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
 234                 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
 235                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
 236                 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
 237                 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
 238                 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
 239                 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
 240                 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
 241                 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
 242                 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
 243                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
 244                 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
 245                 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
 246                 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
 247                 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
 248                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
 249                 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
 250                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
 251                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
 252                 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
 253                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
 254                 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
 255                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
 256                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
 257                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
 258                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
 259                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
 260                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
 261                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
 262                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
 263                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
 264                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
 265                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
 266                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
 267                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
 268                 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
 269                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
 270                 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
 271                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
 272                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
 273                 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
 274                 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
 275                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
 276                 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
 277                 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
 278                 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
 279                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
 280                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
 281                 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
 282                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
 283                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
 284                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
 285                 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
 286                 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
 287                 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
 288                 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
 289                 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
 290                 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
 291                 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
 292                 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
 293                 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
 294                 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
 295                 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
 296                 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
 297                 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
 298                 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
 299                 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
 300                 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
 301                 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
 302                 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
 303                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
 304                 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
 305                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
 306                 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
 307                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
 308                 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
 309                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
 310                 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
 311                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
 312                 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
 313                 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
 314                 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
 315                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
 316                 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
 317                 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
 318                 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
 319                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
 320                 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
 321                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
 322                 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
 323                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
 324                 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
 325                 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
 326                 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
 327                 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
 328                 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
 329                 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
 330                 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
 331                 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
 332                 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
 333                 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
 334                 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
 335                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
 336                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
 337                 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
 338                 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
 339                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
 340                 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
 341                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
 342                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
 343                 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
 344                 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
 345                 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
 346                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = "<group>"; };
 347                 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
 348                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
 349                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
 350                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
 351                 7E412F420F8D213C00381DD0 /* libshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuff.h; sourceTree = "<group>"; };
 352                 7E412F470F8D21B600381DD0 /* slibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slibshuff.h; sourceTree = "<group>"; };
 353                 7E412F480F8D21B600381DD0 /* slibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slibshuff.cpp; sourceTree = "<group>"; };
 354                 7E412FE90F8D3E2C00381DD0 /* libshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuff.cpp; sourceTree = "<group>"; };
 355                 7E4130F60F8E58FA00381DD0 /* dlibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dlibshuff.cpp; sourceTree = "<group>"; };
 356                 7E4130F70F8E58FA00381DD0 /* dlibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dlibshuff.h; sourceTree = "<group>"; };
 357                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
 358                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
 359                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
 360                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
 361                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
 362                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
 363                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
 364                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
 365                 EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
 366                 EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
 367                 EB1216E30F61ACFB004A865F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
 368                 EB1216E40F61ACFB004A865F /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = "<group>"; };
 369                 EB1217210F61C9AC004A865F /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
 370                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = "<group>"; };
 371                 EB6E68170F5F1C780044E17B /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = "<group>"; };
 372                 EB6E68180F5F1C780044E17B /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
 373                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbdiversity.h; sourceTree = "<group>"; };
 374                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbdiversity.cpp; sourceTree = "<group>"; };
 375                 EB9303E90F534D9400E8EF26 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = "<group>"; };
 376                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
 377                 EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
 378                 EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
 379 /* End PBXFileReference section */
 380
 381 /* Begin PBXFrameworksBuildPhase section */
 382                 8DD76F660486A84900D96B5E /* Frameworks */ = {
 383                         isa = PBXFrameworksBuildPhase;
 384                         buildActionMask = 2147483647;
 385                         files = (
 386                         );
 387                         runOnlyForDeploymentPostprocessing = 0;
 388                 };
 389 /* End PBXFrameworksBuildPhase section */
 390
 391 /* Begin PBXGroup section */
 392                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
 393                         isa = PBXGroup;
 394                         children = (
 395                                 08FB7795FE84155DC02AAC07 /* Source */,
 396                                 C6859E8C029090F304C91782 /* Documentation */,
 397                                 1AB674ADFE9D54B511CA2CBB /* Products */,
 398                         );
 399                         name = Mothur;
 400                         sourceTree = "<group>";
 401                 };
 402                 08FB7795FE84155DC02AAC07 /* Source */ = {
 403                         isa = PBXGroup;
 404                         children = (
 405                                 7E4130F60F8E58FA00381DD0 /* dlibshuff.cpp */,
 406                                 7E4130F70F8E58FA00381DD0 /* dlibshuff.h */,
 407                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
 408                                 37D928A60F2133C0001D4494 /* calculators */,
 409                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 410                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 411                                 7E412F470F8D21B600381DD0 /* slibshuff.h */,
 412                                 7E412F480F8D21B600381DD0 /* slibshuff.cpp */,
 413                                 7E412F420F8D213C00381DD0 /* libshuff.h */,
 414                                 7E412FE90F8D3E2C00381DD0 /* libshuff.cpp */,
 415                                 37D928A90F2133E5001D4494 /* commands */,
 416                                 37D927C60F21331F001D4494 /* collect.h */,
 417                                 37D927C50F21331F001D4494 /* collect.cpp */,
 418                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 419                                 37D928AC0F213420001D4494 /* containers */,
 420                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
 421                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
 422                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
 423                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
 424                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 425                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 426                                 37D927D40F21331F001D4494 /* database.hpp */,
 427                                 37D927D30F21331F001D4494 /* database.cpp */,
 428                                 37D927D60F21331F001D4494 /* display.h */,
 429                                 37D927D80F21331F001D4494 /* engine.hpp */,
 430                                 37D927D70F21331F001D4494 /* engine.cpp */,
 431                                 37D928B10F213472001D4494 /* errorcheckor */,
 432                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 433                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 434                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 435                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 436                                 375873ED0F7D646F0040F377 /* heatmap.h */,
 437                                 375873EE0F7D646F0040F377 /* heatmap.cpp */,
 438                                 37D927E60F21331F001D4494 /* inputdata.h */,
 439                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 440                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 441                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 442                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 443                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 444                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
 445                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 446                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 447                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 448                                 37D927F60F21331F001D4494 /* observable.h */,
 449                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 450                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 451                                 37D928040F21331F001D4494 /* raredisplay.h */,
 452                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 453                                 37D928060F21331F001D4494 /* rarefact.h */,
 454                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 455                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 456                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 457                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 458                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 459                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 460                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 461                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 462                                 37D928210F21331F001D4494 /* shared.h */,
 463                                 37D928200F21331F001D4494 /* shared.cpp */,
 464                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 465                                 37D928480F21331F001D4494 /* summarydata.h */,
 466                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 467                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 468                                 37519AB30F810FAE00FED5E8 /* venn.h */,
 469                                 37519AB40F810FAE00FED5E8 /* venn.cpp */,
 470                         );
 471                         name = Source;
 472                         sourceTree = "<group>";
 473                 };
 474                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 475                         isa = PBXGroup;
 476                         children = (
 477                                 8DD76F6C0486A84900D96B5E /* mothur */,
 478                         );
 479                         name = Products;
 480                         sourceTree = "<group>";
 481                 };
 482                 37D928A60F2133C0001D4494 /* calculators */ = {
 483                         isa = PBXGroup;
 484                         children = (
 485                                 37D927BE0F21331F001D4494 /* calculator.h */,
 486                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 487                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 488                                 37D927B90F21331F001D4494 /* ace.h */,
 489                                 37D927B80F21331F001D4494 /* ace.cpp */,
 490                                 EB1216860F619B83004A865F /* bergerparker.h */,
 491                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
 492                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 493                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 494                                 EB1216E30F61ACFB004A865F /* bstick.h */,
 495                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
 496                                 37D927C00F21331F001D4494 /* chao1.h */,
 497                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 498                                 EB9303F70F53517300E8EF26 /* geom.h */,
 499                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
 500                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
 501                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
 502                                 EB6E68170F5F1C780044E17B /* qstat.h */,
 503                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
 504                                 37D927E80F21331F001D4494 /* jackknife.h */,
 505                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 506                                 375873F90F7D64AB0040F377 /* nseqs.h */,
 507                                 37D927F50F21331F001D4494 /* npshannon.h */,
 508                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 509                                 379294880F2E258500B9034A /* parsimony.h */,
 510                                 379294890F2E258500B9034A /* parsimony.cpp */,
 511                                 37D928020F21331F001D4494 /* rarecalc.h */,
 512                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 513                                 37D9281F0F21331F001D4494 /* shannon.h */,
 514                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 515                                 37D928230F21331F001D4494 /* sharedace.h */,
 516                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 517                                 37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */,
 518                                 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */,
 519                                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
 520                                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
 521                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
 522                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
 523                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 524                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 525                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 526                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 527                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 528                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 529                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 530                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 531                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
 532                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
 533                                 375874000F7D64EF0040F377 /* sharedkulczynski.h */,
 534                                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */,
 535                                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */,
 536                                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */,
 537                                 375874010F7D64EF0040F377 /* sharedlennon.h */,
 538                                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */,
 539                                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */,
 540                                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */,
 541                                 375874090F7D64FC0040F377 /* sharedochiai.h */,
 542                                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */,
 543                                 3758740A0F7D64FC0040F377 /* sharednseqs.h */,
 544                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 545                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 546                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
 547                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
 548                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 549                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 550                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 551                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 552                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 553                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 554                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 555                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 556                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 557                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 558                                 37D928410F21331F001D4494 /* simpson.h */,
 559                                 37D928400F21331F001D4494 /* simpson.cpp */,
 560                                 37D928430F21331F001D4494 /* sobs.h */,
 561                                 374610810F40652400460C57 /* unweighted.h */,
 562                                 374610820F40652400460C57 /* unweighted.cpp */,
 563                                 37D9284E0F21331F001D4494 /* uvest.h */,
 564                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 565                                 3746107C0F4064D100460C57 /* weighted.h */,
 566                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 567                         );
 568                         name = calculators;
 569                         sourceTree = "<group>";
 570                 };
 571                 37D928A90F2133E5001D4494 /* commands */ = {
 572                         isa = PBXGroup;
 573                         children = (
 574                                 37D927CD0F21331F001D4494 /* command.hpp */,
 575                                 37C1D9710F86506E0059E3F0 /* binsequencecommand.h */,
 576                                 37C1D9720F86506E0059E3F0 /* binsequencecommand.cpp */,
 577                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 578                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 579                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 580                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 581                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 582                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 583                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 584                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 585                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
 586                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
 587                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
 588                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
 589                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
 590                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
 591                                 370B88050F8A4EE4005AB382 /* getoturepcommand.h */,
 592                                 370B88060F8A4EE4005AB382 /* getoturepcommand.cpp */,
 593                                 375873F10F7D64800040F377 /* heatmapcommand.h */,
 594                                 375873F00F7D64800040F377 /* heatmapcommand.cpp */,
 595                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 596                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 597                                 375873F40F7D648F0040F377 /* libshuffcommand.h */,
 598                                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */,
 599                                 375873F60F7D649C0040F377 /* nocommands.cpp */,
 600                                 375873F70F7D649C0040F377 /* nocommands.h */,
 601                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 602                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 603                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 604                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 605                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 606                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 607                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 608                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 609                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 610                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 611                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 612                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 613                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 614                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 615                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 616                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 617                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 618                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 619                                 37D928470F21331F001D4494 /* summarycommand.h */,
 620                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 621                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 622                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 623                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 624                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 625                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 626                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 627                                 37519A9F0F810D0200FED5E8 /* venncommand.h */,
 628                                 37519AA00F810D0200FED5E8 /* venncommand.cpp */,
 629                         );
 630                         name = commands;
 631                         sourceTree = "<group>";
 632                 };
 633                 37D928AC0F213420001D4494 /* containers */ = {
 634                         isa = PBXGroup;
 635                         children = (
 636                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 637                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 638                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 639                                 375873EA0F7D64520040F377 /* fullmatrix.h */,
 640                                 375873EB0F7D64520040F377 /* fullmatrix.cpp */,
 641                                 37D927E20F21331F001D4494 /* groupmap.h */,
 642                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 643                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 644                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 645                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 646                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 647                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 648                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 649                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 650                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 651                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 652                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 653                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 654                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 655                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 656                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 657                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 658                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 659                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 660                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 661                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 662                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 663                                 379293C10F2DE73400B9034A /* treemap.h */,
 664                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 665                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 666                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 667                         );
 668                         name = containers;
 669                         sourceTree = "<group>";
 670                 };
 671                 37D928B10F213472001D4494 /* errorcheckor */ = {
 672                         isa = PBXGroup;
 673                         children = (
 674                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 675                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 676                                 37D928500F21331F001D4494 /* validcalculator.h */,
 677                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 678                                 37D928520F21331F001D4494 /* validcommands.h */,
 679                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 680                                 37D928540F21331F001D4494 /* validparameter.h */,
 681                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 682                         );
 683                         name = errorcheckor;
 684                         sourceTree = "<group>";
 685                 };
 686                 C6859E8C029090F304C91782 /* Documentation */ = {
 687                         isa = PBXGroup;
 688                         children = (
 689                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 690                         );
 691                         name = Documentation;
 692                         sourceTree = "<group>";
 693                 };
 694 /* End PBXGroup section */
 695
 696 /* Begin PBXNativeTarget section */
 697                 8DD76F620486A84900D96B5E /* mothur */ = {
 698                         isa = PBXNativeTarget;
 699                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 700                         buildPhases = (
 701                                 8DD76F640486A84900D96B5E /* Sources */,
 702                                 8DD76F660486A84900D96B5E /* Frameworks */,
 703                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 704                         );
 705                         buildRules = (
 706                         );
 707                         dependencies = (
 708                         );
 709                         name = mothur;
 710                         productInstallPath = "$(HOME)/bin";
 711                         productName = Mothur;
 712                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 713                         productType = "com.apple.product-type.tool";
 714                 };
 715 /* End PBXNativeTarget section */
 716
 717 /* Begin PBXProject section */
 718                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 719                         isa = PBXProject;
 720                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 721                         compatibilityVersion = "Xcode 3.0";
 722                         hasScannedForEncodings = 1;
 723                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 724                         projectDirPath = "";
 725                         projectRoot = "";
 726                         targets = (
 727                                 8DD76F620486A84900D96B5E /* mothur */,
 728                         );
 729                 };
 730 /* End PBXProject section */
 731
 732 /* Begin PBXSourcesBuildPhase section */
 733                 8DD76F640486A84900D96B5E /* Sources */ = {
 734                         isa = PBXSourcesBuildPhase;
 735                         buildActionMask = 2147483647;
 736                         files = (
 737                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
 738                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
 739                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
 740                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
 741                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 742                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 743                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 744                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 745                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 746                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 747                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
 748                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
 749                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 750                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 751                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
 752                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
 753                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
 754                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
 755                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
 756                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
 757                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
 758                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 759                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
 760                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
 761                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
 762                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
 763                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
 764                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
 765                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
 766                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
 767                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
 768                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
 769                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
 770                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
 771                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
 772                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
 773                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
 774                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
 775                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
 776                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
 777                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
 778                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
 779                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
 780                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
 781                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
 782                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
 783                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
 784                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
 785                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
 786                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
 787                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
 788                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
 789                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
 790                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
 791                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
 792                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
 793                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
 794                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
 795                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
 796                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
 797                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
 798                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
 799                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
 800                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
 801                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
 802                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
 803                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
 804                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
 805                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
 806                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
 807                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
 808                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
 809                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
 810                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
 811                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
 812                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
 813                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
 814                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
 815                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
 816                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
 817                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
 818                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
 819                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
 820                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
 821                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
 822                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
 823                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
 824                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
 825                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
 826                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
 827                                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
 828                                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
 829                                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
 830                                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
 831                                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
 832                                 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */,
 833                                 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */,
 834                                 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */,
 835                                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */,
 836                                 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */,
 837                                 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */,
 838                                 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */,
 839                                 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */,
 840                                 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
 841                                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
 842                                 37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */,
 843                                 37519AA10F810D0200FED5E8 /* venncommand.cpp in Sources */,
 844                                 37519AB50F810FAE00FED5E8 /* venn.cpp in Sources */,
 845                                 37C1D9730F86506E0059E3F0 /* binsequencecommand.cpp in Sources */,
 846                                 370B88070F8A4EE4005AB382 /* getoturepcommand.cpp in Sources */,
 847                                 7E412F490F8D21B600381DD0 /* slibshuff.cpp in Sources */,
 848                                 7E412FEA0F8D3E2C00381DD0 /* libshuff.cpp in Sources */,
 849                                 7E4130F80F8E58FA00381DD0 /* dlibshuff.cpp in Sources */,
 850                         );
 851                         runOnlyForDeploymentPostprocessing = 0;
 852                 };
 853 /* End PBXSourcesBuildPhase section */
 854
 855 /* Begin XCBuildConfiguration section */
 856                 1DEB923208733DC60010E9CD /* Debug */ = {
 857                         isa = XCBuildConfiguration;
 858                         buildSettings = {
 859                                 COPY_PHASE_STRIP = NO;
 860                                 GCC_DYNAMIC_NO_PIC = NO;
 861                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
 862                                 GCC_MODEL_TUNING = G5;
 863                                 GCC_OPTIMIZATION_LEVEL = 0;
 864                                 GCC_PREPROCESSOR_DEFINITIONS = (
 865                                         "_GLIBCXX_DEBUG=1",
 866                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
 867                                 );
 868                                 INSTALL_PATH = /usr/local/bin;
 869                                 PRODUCT_NAME = mothur;
 870                                 ZERO_LINK = YES;
 871                         };
 872                         name = Debug;
 873                 };
 874                 1DEB923308733DC60010E9CD /* Release */ = {
 875                         isa = XCBuildConfiguration;
 876                         buildSettings = {
 877                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
 878                                 GCC_MODEL_TUNING = G5;
 879                                 INSTALL_PATH = /usr/local/bin;
 880                                 PRODUCT_NAME = mothur;
 881                         };
 882                         name = Release;
 883                 };
 884                 1DEB923608733DC60010E9CD /* Debug */ = {
 885                         isa = XCBuildConfiguration;
 886                         buildSettings = {
 887                                 GCC_OPTIMIZATION_LEVEL = 3;
 888                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 889                                 GCC_WARN_UNUSED_VARIABLE = YES;
 890                                 PREBINDING = NO;
 891                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
 892                         };
 893                         name = Debug;
 894                 };
 895                 1DEB923708733DC60010E9CD /* Release */ = {
 896                         isa = XCBuildConfiguration;
 897                         buildSettings = {
 898                                 ARCHS = (
 899                                         ppc,
 900                                         i386,
 901                                 );
 902                                 GCC_OPTIMIZATION_LEVEL = 3;
 903                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 904                                 GCC_WARN_UNUSED_VARIABLE = YES;
 905                                 PREBINDING = NO;
 906                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
 907                         };
 908                         name = Release;
 909                 };
 910 /* End XCBuildConfiguration section */
 911
 912 /* Begin XCConfigurationList section */
 913                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
 914                         isa = XCConfigurationList;
 915                         buildConfigurations = (
 916                                 1DEB923208733DC60010E9CD /* Debug */,
 917                                 1DEB923308733DC60010E9CD /* Release */,
 918                         );
 919                         defaultConfigurationIsVisible = 0;
 920                         defaultConfigurationName = Release;
 921                 };
 922                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
 923                         isa = XCConfigurationList;
 924                         buildConfigurations = (
 925                                 1DEB923608733DC60010E9CD /* Debug */,
 926                                 1DEB923708733DC60010E9CD /* Release */,
 927                         );
 928                         defaultConfigurationIsVisible = 0;
 929                         defaultConfigurationName = Release;
 930                 };
 931 /* End XCConfigurationList section */
 932         };
 933         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
 934 }