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112                         buildActionMask = 8;
113                         dstPath = /usr/share/man/man1/;
114                         dstSubfolderSpec = 0;
115                         files = (
116                                 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */,
117                         );
118                         runOnlyForDeploymentPostprocessing = 1;
119                 };
120 /* End PBXCopyFilesBuildPhase section */
121
122 /* Begin PBXFileReference section */
123                 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
124                 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
125                 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
126                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
127                 372E12EC0F264D320095CF7E /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = "<group>"; };
128                 374610760F40645300460C57 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
129                 374610770F40645300460C57 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
130                 3746107C0F4064D100460C57 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
131                 3746107D0F4064D100460C57 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
132                 374610810F40652400460C57 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
133                 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
134                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
135                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
136                 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
137                 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
138                 3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
139                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
140                 379294880F2E258500B9034A /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
141                 379294890F2E258500B9034A /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
142                 3792948D0F2E271100B9034A /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
143                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
144                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
145                 37AD4DB90F28E2FE00AA2D49 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
146                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
147                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
148                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
149                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
150                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
151                 37B28F660F27590100808A62 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
152                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
153                 37D927B80F21331F001D4494 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
154                 37D927B90F21331F001D4494 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
155                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = "<group>"; };
156                 37D927BB0F21331F001D4494 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
157                 37D927BC0F21331F001D4494 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
158                 37D927BD0F21331F001D4494 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
159                 37D927BE0F21331F001D4494 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
160                 37D927BF0F21331F001D4494 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
161                 37D927C00F21331F001D4494 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
162                 37D927C10F21331F001D4494 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
163                 37D927C20F21331F001D4494 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
164                 37D927C30F21331F001D4494 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
165                 37D927C40F21331F001D4494 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
166                 37D927C50F21331F001D4494 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = "<group>"; };
167                 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
168                 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
169                 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
170                 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
171                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
172                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
173                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
174                 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
175                 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
176                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
177                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
178                 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
179                 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
180                 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
181                 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
182                 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
183                 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
184                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
185                 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
186                 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
187                 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
188                 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
189                 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
190                 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
191                 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
192                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
193                 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
194                 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
195                 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
196                 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
197                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
198                 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
199                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
200                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
201                 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
202                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
203                 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
204                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
205                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
206                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
207                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
208                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
209                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
210                 37D927F20F21331F001D4494 /* nocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommand.cpp; sourceTree = "<group>"; };
211                 37D927F30F21331F001D4494 /* nocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommand.h; sourceTree = "<group>"; };
212                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
213                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
214                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
215                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
216                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
217                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
218                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
219                 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
220                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
221                 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
222                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
223                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
224                 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
225                 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
226                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
227                 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
228                 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
229                 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
230                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
231                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
232                 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
233                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
234                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
235                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
236                 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
237                 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
238                 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
239                 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
240                 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
241                 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
242                 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
243                 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
244                 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
245                 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
246                 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
247                 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
248                 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
249                 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
250                 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
251                 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
252                 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
253                 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
254                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
255                 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
256                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
257                 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
258                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
259                 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
260                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
261                 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
262                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
263                 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
264                 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
265                 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
266                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
267                 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
268                 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
269                 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
270                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
271                 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
272                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
273                 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
274                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
275                 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
276                 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
277                 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
278                 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
279                 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
280                 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
281                 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
282                 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
283                 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
284                 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
285                 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
286                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
287                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
288                 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
289                 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
290                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
291                 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
292                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
293                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
294                 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
295                 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
296                 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
297                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = "<group>"; };
298                 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
299                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
300                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
301                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
302                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
303                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
304                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
305                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
306                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
307                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
308                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
309                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
310                 EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
311                 EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
312                 EB1216E30F61ACFB004A865F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
313                 EB1216E40F61ACFB004A865F /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = "<group>"; };
314                 EB1217210F61C9AC004A865F /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
315                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = "<group>"; };
316                 EB6E68170F5F1C780044E17B /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = "<group>"; };
317                 EB6E68180F5F1C780044E17B /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
318                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbdiversity.h; sourceTree = "<group>"; };
319                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbdiversity.cpp; sourceTree = "<group>"; };
320                 EB9303E90F534D9400E8EF26 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = "<group>"; };
321                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
322                 EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
323                 EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
324                 EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = jackknife2.h; path = ../jackknife2.h; sourceTree = SOURCE_ROOT; };
325                 EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = jackknife2.cpp; path = ../jackknife2.cpp; sourceTree = SOURCE_ROOT; };
326 /* End PBXFileReference section */
327
328 /* Begin PBXFrameworksBuildPhase section */
329                 8DD76F660486A84900D96B5E /* Frameworks */ = {
330                         isa = PBXFrameworksBuildPhase;
331                         buildActionMask = 2147483647;
332                         files = (
333                         );
334                         runOnlyForDeploymentPostprocessing = 0;
335                 };
336 /* End PBXFrameworksBuildPhase section */
337
338 /* Begin PBXGroup section */
339                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
340                         isa = PBXGroup;
341                         children = (
342                                 08FB7795FE84155DC02AAC07 /* Source */,
343                                 C6859E8C029090F304C91782 /* Documentation */,
344                                 1AB674ADFE9D54B511CA2CBB /* Products */,
345                         );
346                         name = Mothur;
347                         sourceTree = "<group>";
348                 };
349                 08FB7795FE84155DC02AAC07 /* Source */ = {
350                         isa = PBXGroup;
351                         children = (
352                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
353                                 37D928A60F2133C0001D4494 /* calculators */,
354                                 37D927C20F21331F001D4494 /* cluster.hpp */,
355                                 37D927C10F21331F001D4494 /* cluster.cpp */,
356                                 37D928A90F2133E5001D4494 /* commands */,
357                                 37D927C60F21331F001D4494 /* collect.h */,
358                                 37D927C50F21331F001D4494 /* collect.cpp */,
359                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
360                                 37D928AC0F213420001D4494 /* containers */,
361                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
362                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
363                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
364                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
365                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
366                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
367                                 37D927D40F21331F001D4494 /* database.hpp */,
368                                 37D927D30F21331F001D4494 /* database.cpp */,
369                                 37D927D60F21331F001D4494 /* display.h */,
370                                 37D927D80F21331F001D4494 /* engine.hpp */,
371                                 37D927D70F21331F001D4494 /* engine.cpp */,
372                                 37D928B10F213472001D4494 /* errorcheckor */,
373                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
374                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
375                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
376                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
377                                 37D927E60F21331F001D4494 /* inputdata.h */,
378                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
379                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
380                                 37D927E90F21331F001D4494 /* kmer.cpp */,
381                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
382                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
383                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
384                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
385                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
386                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
387                                 37D927F60F21331F001D4494 /* observable.h */,
388                                 37D927FC0F21331F001D4494 /* progress.hpp */,
389                                 37D927FB0F21331F001D4494 /* progress.cpp */,
390                                 37D928040F21331F001D4494 /* raredisplay.h */,
391                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
392                                 37D928060F21331F001D4494 /* rarefact.h */,
393                                 37D928050F21331F001D4494 /* rarefact.cpp */,
394                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
395                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
396                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
397                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
398                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
399                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
400                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
401                                 37D928210F21331F001D4494 /* shared.h */,
402                                 37D928200F21331F001D4494 /* shared.cpp */,
403                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
404                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
405                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
406                                 37D928480F21331F001D4494 /* summarydata.h */,
407                                 37D928490F21331F001D4494 /* summarydisplay.h */,
408                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
409                         );
410                         name = Source;
411                         sourceTree = "<group>";
412                 };
413                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
414                         isa = PBXGroup;
415                         children = (
416                                 8DD76F6C0486A84900D96B5E /* mothur */,
417                         );
418                         name = Products;
419                         sourceTree = "<group>";
420                 };
421                 37D928A60F2133C0001D4494 /* calculators */ = {
422                         isa = PBXGroup;
423                         children = (
424                                 37D927BE0F21331F001D4494 /* calculator.h */,
425                                 3792948D0F2E271100B9034A /* treecalculator.h */,
426                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
427                                 37D927B90F21331F001D4494 /* ace.h */,
428                                 37D927B80F21331F001D4494 /* ace.cpp */,
429                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
430                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
431                                 37D927C00F21331F001D4494 /* chao1.h */,
432                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
433                                 EB9303F70F53517300E8EF26 /* geom.h */,
434                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
435                                 EB6E68170F5F1C780044E17B /* qstat.h */,
436                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
437                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
438                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
439                                 EB1216860F619B83004A865F /* bergerparker.h */,
440                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
441                                 EB1216E30F61ACFB004A865F /* bstick.h */,
442                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
443                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
444                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
445                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
446                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
447                                 EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */,
448                                 EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */,
449                                 37D927E80F21331F001D4494 /* jackknife.h */,
450                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
451                                 37D927F50F21331F001D4494 /* npshannon.h */,
452                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
453                                 379294880F2E258500B9034A /* parsimony.h */,
454                                 379294890F2E258500B9034A /* parsimony.cpp */,
455                                 37D928020F21331F001D4494 /* rarecalc.h */,
456                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
457                                 37D9281F0F21331F001D4494 /* shannon.h */,
458                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
459                                 37D928230F21331F001D4494 /* sharedace.h */,
460                                 37D928220F21331F001D4494 /* sharedace.cpp */,
461                                 37D928250F21331F001D4494 /* sharedchao1.h */,
462                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
463                                 37D928290F21331F001D4494 /* sharedjabund.h */,
464                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
465                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
466                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
467                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
468                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
469                                 37D928350F21331F001D4494 /* sharedsobs.h */,
470                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
471                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
472                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
473                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
474                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
475                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
476                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
477                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
478                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
479                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
480                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
481                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
482                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
483                                 37D928410F21331F001D4494 /* simpson.h */,
484                                 37D928400F21331F001D4494 /* simpson.cpp */,
485                                 37D928430F21331F001D4494 /* sobs.h */,
486                                 374610810F40652400460C57 /* unweighted.h */,
487                                 374610820F40652400460C57 /* unweighted.cpp */,
488                                 37D9284E0F21331F001D4494 /* uvest.h */,
489                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
490                                 3746107C0F4064D100460C57 /* weighted.h */,
491                                 3746107D0F4064D100460C57 /* weighted.cpp */,
492                         );
493                         name = calculators;
494                         sourceTree = "<group>";
495                 };
496                 37D928A90F2133E5001D4494 /* commands */ = {
497                         isa = PBXGroup;
498                         children = (
499                                 37D927CD0F21331F001D4494 /* command.hpp */,
500                                 37D927C40F21331F001D4494 /* clustercommand.h */,
501                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
502                                 37D927C80F21331F001D4494 /* collectcommand.h */,
503                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
504                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
505                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
506                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
507                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
508                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
509                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
510                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
511                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
512                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
513                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
514                                 37D927E40F21331F001D4494 /* helpcommand.h */,
515                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
516                                 37D927F30F21331F001D4494 /* nocommand.h */,
517                                 37D927F20F21331F001D4494 /* nocommand.cpp */,
518                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
519                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
520                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
521                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
522                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
523                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
524                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
525                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
526                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
527                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
528                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
529                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
530                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
531                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
532                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
533                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
534                                 37D928270F21331F001D4494 /* sharedcommand.h */,
535                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
536                                 37D928470F21331F001D4494 /* summarycommand.h */,
537                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
538                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
539                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
540                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
541                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
542                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
543                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
544                         );
545                         name = commands;
546                         sourceTree = "<group>";
547                 };
548                 37D928AC0F213420001D4494 /* containers */ = {
549                         isa = PBXGroup;
550                         children = (
551                                 37D927D50F21331F001D4494 /* datavector.hpp */,
552                                 37D927DC0F21331F001D4494 /* fastamap.h */,
553                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
554                                 37D927E20F21331F001D4494 /* groupmap.h */,
555                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
556                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
557                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
558                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
559                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
560                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
561                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
562                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
563                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
564                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
565                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
566                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
567                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
568                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
569                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
570                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
571                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
572                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
573                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
574                                 379293C10F2DE73400B9034A /* treemap.h */,
575                                 379293C20F2DE73400B9034A /* treemap.cpp */,
576                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
577                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
578                         );
579                         name = containers;
580                         sourceTree = "<group>";
581                 };
582                 37D928B10F213472001D4494 /* errorcheckor */ = {
583                         isa = PBXGroup;
584                         children = (
585                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
586                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
587                                 37D928500F21331F001D4494 /* validcalculator.h */,
588                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
589                                 37D928520F21331F001D4494 /* validcommands.h */,
590                                 37D928510F21331F001D4494 /* validcommands.cpp */,
591                                 37D928540F21331F001D4494 /* validparameter.h */,
592                                 37D928530F21331F001D4494 /* validparameter.cpp */,
593                         );
594                         name = errorcheckor;
595                         sourceTree = "<group>";
596                 };
597                 C6859E8C029090F304C91782 /* Documentation */ = {
598                         isa = PBXGroup;
599                         children = (
600                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
601                         );
602                         name = Documentation;
603                         sourceTree = "<group>";
604                 };
605 /* End PBXGroup section */
606
607 /* Begin PBXNativeTarget section */
608                 8DD76F620486A84900D96B5E /* mothur */ = {
609                         isa = PBXNativeTarget;
610                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
611                         buildPhases = (
612                                 8DD76F640486A84900D96B5E /* Sources */,
613                                 8DD76F660486A84900D96B5E /* Frameworks */,
614                                 8DD76F690486A84900D96B5E /* CopyFiles */,
615                         );
616                         buildRules = (
617                         );
618                         dependencies = (
619                         );
620                         name = mothur;
621                         productInstallPath = "$(HOME)/bin";
622                         productName = Mothur;
623                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
624                         productType = "com.apple.product-type.tool";
625                 };
626 /* End PBXNativeTarget section */
627
628 /* Begin PBXProject section */
629                 08FB7793FE84155DC02AAC07 /* Project object */ = {
630                         isa = PBXProject;
631                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
632                         compatibilityVersion = "Xcode 3.0";
633                         hasScannedForEncodings = 1;
634                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
635                         projectDirPath = "";
636                         projectRoot = "";
637                         targets = (
638                                 8DD76F620486A84900D96B5E /* mothur */,
639                         );
640                 };
641 /* End PBXProject section */
642
643 /* Begin PBXSourcesBuildPhase section */
644                 8DD76F640486A84900D96B5E /* Sources */ = {
645                         isa = PBXSourcesBuildPhase;
646                         buildActionMask = 2147483647;
647                         files = (
648                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
649                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
650                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
651                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
652                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
653                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
654                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
655                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
656                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
657                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
658                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
659                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
660                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
661                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
662                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
663                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
664                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
665                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
666                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
667                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
668                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
669                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
670                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
671                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
672                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
673                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
674                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
675                                 37D928710F21331F001D4494 /* nocommand.cpp in Sources */,
676                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
677                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
678                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
679                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
680                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
681                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
682                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
683                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
684                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
685                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
686                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
687                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
688                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
689                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
690                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
691                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
692                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
693                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
694                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
695                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
696                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
697                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
698                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
699                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
700                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
701                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
702                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
703                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
704                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
705                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
706                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
707                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
708                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
709                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
710                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
711                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
712                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
713                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
714                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
715                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
716                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
717                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
718                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
719                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
720                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
721                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
722                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
723                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
724                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
725                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
726                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
727                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
728                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
729                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
730                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
731                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
732                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
733                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
734                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
735                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
736                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
737                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
738                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
739                                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
740                                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
741                                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
742                                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
743                                 EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */,
744                         );
745                         runOnlyForDeploymentPostprocessing = 0;
746                 };
747 /* End PBXSourcesBuildPhase section */
748
749 /* Begin XCBuildConfiguration section */
750                 1DEB923208733DC60010E9CD /* Debug */ = {
751                         isa = XCBuildConfiguration;
752                         buildSettings = {
753                                 COPY_PHASE_STRIP = NO;
754                                 GCC_DYNAMIC_NO_PIC = NO;
755                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
756                                 GCC_MODEL_TUNING = G5;
757                                 GCC_OPTIMIZATION_LEVEL = 0;
758                                 GCC_PREPROCESSOR_DEFINITIONS = (
759                                         "_GLIBCXX_DEBUG=1",
760                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
761                                 );
762                                 INSTALL_PATH = /usr/local/bin;
763                                 PRODUCT_NAME = mothur;
764                                 ZERO_LINK = YES;
765                         };
766                         name = Debug;
767                 };
768                 1DEB923308733DC60010E9CD /* Release */ = {
769                         isa = XCBuildConfiguration;
770                         buildSettings = {
771                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
772                                 GCC_MODEL_TUNING = G5;
773                                 INSTALL_PATH = /usr/local/bin;
774                                 PRODUCT_NAME = mothur;
775                         };
776                         name = Release;
777                 };
778                 1DEB923608733DC60010E9CD /* Debug */ = {
779                         isa = XCBuildConfiguration;
780                         buildSettings = {
781                                 GCC_OPTIMIZATION_LEVEL = 3;
782                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
783                                 GCC_WARN_UNUSED_VARIABLE = YES;
784                                 PREBINDING = NO;
785                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
786                         };
787                         name = Debug;
788                 };
789                 1DEB923708733DC60010E9CD /* Release */ = {
790                         isa = XCBuildConfiguration;
791                         buildSettings = {
792                                 ARCHS = (
793                                         ppc,
794                                         i386,
795                                 );
796                                 GCC_OPTIMIZATION_LEVEL = 0;
797                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
798                                 GCC_WARN_UNUSED_VARIABLE = YES;
799                                 PREBINDING = NO;
800                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
801                         };
802                         name = Release;
803                 };
804 /* End XCBuildConfiguration section */
805
806 /* Begin XCConfigurationList section */
807                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
808                         isa = XCConfigurationList;
809                         buildConfigurations = (
810                                 1DEB923208733DC60010E9CD /* Debug */,
811                                 1DEB923308733DC60010E9CD /* Release */,
812                         );
813                         defaultConfigurationIsVisible = 0;
814                         defaultConfigurationName = Release;
815                 };
816                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
817                         isa = XCConfigurationList;
818                         buildConfigurations = (
819                                 1DEB923608733DC60010E9CD /* Debug */,
820                                 1DEB923708733DC60010E9CD /* Release */,
821                         );
822                         defaultConfigurationIsVisible = 0;
823                         defaultConfigurationName = Release;
824                 };
825 /* End XCConfigurationList section */
826         };
827         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
828 }