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[mothur.git] / Mothur.xcodeproj / project.pbxproj
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111                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216E40F61ACFB004A865F /* bstick.cpp */; };
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117 /* End PBXBuildFile section */
118
119 /* Begin PBXCopyFilesBuildPhase section */
120                 8DD76F690486A84900D96B5E /* CopyFiles */ = {
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130 /* End PBXCopyFilesBuildPhase section */
131
132 /* Begin PBXFileReference section */
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145                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
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149                 375873EB0F7D64520040F377 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
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153                 375873F10F7D64800040F377 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = "<group>"; };
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155                 375873F40F7D648F0040F377 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
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157                 375873F70F7D649C0040F377 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
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211                 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
212                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
213                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
214                 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
215                 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
216                 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
217                 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
218                 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
219                 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
220                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
221                 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
222                 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
223                 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
224                 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
225                 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
226                 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
227                 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
228                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
229                 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
230                 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
231                 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
232                 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
233                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
234                 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
235                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
236                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
237                 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
238                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
239                 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
240                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
241                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
242                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
243                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
244                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
245                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
246                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
247                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
248                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
249                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
250                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
251                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
252                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
253                 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
254                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
255                 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
256                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
257                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
258                 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
259                 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
260                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
261                 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
262                 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
263                 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
264                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
265                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
266                 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
267                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
268                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
269                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
270                 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
271                 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
272                 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
273                 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
274                 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
275                 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
276                 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
277                 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
278                 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
279                 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
280                 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
281                 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
282                 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
283                 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
284                 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
285                 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
286                 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
287                 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
288                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
289                 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
290                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
291                 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
292                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
293                 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
294                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
295                 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
296                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
297                 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
298                 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
299                 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
300                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
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302                 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
303                 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
304                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
305                 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
306                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
307                 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
308                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
309                 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
310                 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
311                 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
312                 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
313                 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
314                 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
315                 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
316                 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
317                 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
318                 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
319                 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
320                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
321                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
322                 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
323                 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
324                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
325                 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
326                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
327                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
328                 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
329                 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
330                 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
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332                 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
333                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
334                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
335                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
336                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
337                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
338                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
339                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
340                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
341                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
342                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
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344                 EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
345                 EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
346                 EB1216E30F61ACFB004A865F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
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351                 EB6E68180F5F1C780044E17B /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
352                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbdiversity.h; sourceTree = "<group>"; };
353                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbdiversity.cpp; sourceTree = "<group>"; };
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355                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
356                 EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
357                 EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
358 /* End PBXFileReference section */
359
360 /* Begin PBXFrameworksBuildPhase section */
361                 8DD76F660486A84900D96B5E /* Frameworks */ = {
362                         isa = PBXFrameworksBuildPhase;
363                         buildActionMask = 2147483647;
364                         files = (
365                         );
366                         runOnlyForDeploymentPostprocessing = 0;
367                 };
368 /* End PBXFrameworksBuildPhase section */
369
370 /* Begin PBXGroup section */
371                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
372                         isa = PBXGroup;
373                         children = (
374                                 08FB7795FE84155DC02AAC07 /* Source */,
375                                 C6859E8C029090F304C91782 /* Documentation */,
376                                 1AB674ADFE9D54B511CA2CBB /* Products */,
377                         );
378                         name = Mothur;
379                         sourceTree = "<group>";
380                 };
381                 08FB7795FE84155DC02AAC07 /* Source */ = {
382                         isa = PBXGroup;
383                         children = (
384                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
385                                 37D928A60F2133C0001D4494 /* calculators */,
386                                 37D927C20F21331F001D4494 /* cluster.hpp */,
387                                 37D927C10F21331F001D4494 /* cluster.cpp */,
388                                 37D928A90F2133E5001D4494 /* commands */,
389                                 37D927C60F21331F001D4494 /* collect.h */,
390                                 37D927C50F21331F001D4494 /* collect.cpp */,
391                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
392                                 37D928AC0F213420001D4494 /* containers */,
393                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
394                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
395                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
396                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
397                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
398                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
399                                 37D927D40F21331F001D4494 /* database.hpp */,
400                                 37D927D30F21331F001D4494 /* database.cpp */,
401                                 37D927D60F21331F001D4494 /* display.h */,
402                                 37D927D80F21331F001D4494 /* engine.hpp */,
403                                 37D927D70F21331F001D4494 /* engine.cpp */,
404                                 37D928B10F213472001D4494 /* errorcheckor */,
405                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
406                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
407                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
408                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
409                                 375873ED0F7D646F0040F377 /* heatmap.h */,
410                                 375873EE0F7D646F0040F377 /* heatmap.cpp */,
411                                 37D927E60F21331F001D4494 /* inputdata.h */,
412                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
413                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
414                                 37D927E90F21331F001D4494 /* kmer.cpp */,
415                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
416                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
417                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
418                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
419                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
420                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
421                                 37D927F60F21331F001D4494 /* observable.h */,
422                                 37D927FC0F21331F001D4494 /* progress.hpp */,
423                                 37D927FB0F21331F001D4494 /* progress.cpp */,
424                                 37D928040F21331F001D4494 /* raredisplay.h */,
425                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
426                                 37D928060F21331F001D4494 /* rarefact.h */,
427                                 37D928050F21331F001D4494 /* rarefact.cpp */,
428                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
429                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
430                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
431                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
432                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
433                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
434                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
435                                 37D928210F21331F001D4494 /* shared.h */,
436                                 37D928200F21331F001D4494 /* shared.cpp */,
437                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
438                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
439                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
440                                 37D928480F21331F001D4494 /* summarydata.h */,
441                                 37D928490F21331F001D4494 /* summarydisplay.h */,
442                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
443                         );
444                         name = Source;
445                         sourceTree = "<group>";
446                 };
447                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
448                         isa = PBXGroup;
449                         children = (
450                                 8DD76F6C0486A84900D96B5E /* mothur */,
451                         );
452                         name = Products;
453                         sourceTree = "<group>";
454                 };
455                 37D928A60F2133C0001D4494 /* calculators */ = {
456                         isa = PBXGroup;
457                         children = (
458                                 37D927BE0F21331F001D4494 /* calculator.h */,
459                                 3792948D0F2E271100B9034A /* treecalculator.h */,
460                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
461                                 37D927B90F21331F001D4494 /* ace.h */,
462                                 37D927B80F21331F001D4494 /* ace.cpp */,
463                                 EB1216860F619B83004A865F /* bergerparker.h */,
464                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
465                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
466                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
467                                 EB1216E30F61ACFB004A865F /* bstick.h */,
468                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
469                                 37D927C00F21331F001D4494 /* chao1.h */,
470                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
471                                 375873E60F7D63E90040F377 /* coverage.h */,
472                                 375873E50F7D63E90040F377 /* coverage.cpp */,
473                                 EB9303F70F53517300E8EF26 /* geom.h */,
474                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
475                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
476                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
477                                 EB6E68170F5F1C780044E17B /* qstat.h */,
478                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
479                                 37D927E80F21331F001D4494 /* jackknife.h */,
480                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
481                                 375873F90F7D64AB0040F377 /* nseqs.h */,
482                                 37D927F50F21331F001D4494 /* npshannon.h */,
483                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
484                                 379294880F2E258500B9034A /* parsimony.h */,
485                                 379294890F2E258500B9034A /* parsimony.cpp */,
486                                 37D928020F21331F001D4494 /* rarecalc.h */,
487                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
488                                 37D9281F0F21331F001D4494 /* shannon.h */,
489                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
490                                 37D928230F21331F001D4494 /* sharedace.h */,
491                                 37D928220F21331F001D4494 /* sharedace.cpp */,
492                                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
493                                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
494                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
495                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
496                                 37D928250F21331F001D4494 /* sharedchao1.h */,
497                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
498                                 37D928290F21331F001D4494 /* sharedjabund.h */,
499                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
500                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
501                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
502                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
503                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
504                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
505                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
506                                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */,
507                                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */,
508                                 375874000F7D64EF0040F377 /* sharedkulczynski.h */,
509                                 375874010F7D64EF0040F377 /* sharedlennon.h */,
510                                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */,
511                                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */,
512                                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */,
513                                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */,
514                                 375874090F7D64FC0040F377 /* sharedochiai.h */,
515                                 3758740A0F7D64FC0040F377 /* sharednseqs.h */,
516                                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */,
517                                 37D928350F21331F001D4494 /* sharedsobs.h */,
518                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
519                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
520                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
521                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
522                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
523                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
524                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
525                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
526                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
527                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
528                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
529                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
530                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
531                                 37D928410F21331F001D4494 /* simpson.h */,
532                                 37D928400F21331F001D4494 /* simpson.cpp */,
533                                 37D928430F21331F001D4494 /* sobs.h */,
534                                 374610810F40652400460C57 /* unweighted.h */,
535                                 374610820F40652400460C57 /* unweighted.cpp */,
536                                 37D9284E0F21331F001D4494 /* uvest.h */,
537                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
538                                 3746107C0F4064D100460C57 /* weighted.h */,
539                                 3746107D0F4064D100460C57 /* weighted.cpp */,
540                         );
541                         name = calculators;
542                         sourceTree = "<group>";
543                 };
544                 37D928A90F2133E5001D4494 /* commands */ = {
545                         isa = PBXGroup;
546                         children = (
547                                 37D927CD0F21331F001D4494 /* command.hpp */,
548                                 37D927C40F21331F001D4494 /* clustercommand.h */,
549                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
550                                 37D927C80F21331F001D4494 /* collectcommand.h */,
551                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
552                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
553                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
554                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
555                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
556                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
557                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
558                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
559                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
560                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
561                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
562                                 375873F00F7D64800040F377 /* heatmapcommand.cpp */,
563                                 375873F10F7D64800040F377 /* heatmapcommand.h */,
564                                 37D927E40F21331F001D4494 /* helpcommand.h */,
565                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
566                                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */,
567                                 375873F40F7D648F0040F377 /* libshuffcommand.h */,
568                                 375873F60F7D649C0040F377 /* nocommands.cpp */,
569                                 375873F70F7D649C0040F377 /* nocommands.h */,
570                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
571                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
572                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
573                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
574                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
575                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
576                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
577                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
578                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
579                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
580                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
581                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
582                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
583                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
584                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
585                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
586                                 37D928270F21331F001D4494 /* sharedcommand.h */,
587                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
588                                 37D928470F21331F001D4494 /* summarycommand.h */,
589                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
590                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
591                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
592                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
593                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
594                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
595                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
596                         );
597                         name = commands;
598                         sourceTree = "<group>";
599                 };
600                 37D928AC0F213420001D4494 /* containers */ = {
601                         isa = PBXGroup;
602                         children = (
603                                 37D927D50F21331F001D4494 /* datavector.hpp */,
604                                 37D927DC0F21331F001D4494 /* fastamap.h */,
605                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
606                                 375873EA0F7D64520040F377 /* fullmatrix.h */,
607                                 375873EB0F7D64520040F377 /* fullmatrix.cpp */,
608                                 37D927E20F21331F001D4494 /* groupmap.h */,
609                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
610                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
611                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
612                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
613                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
614                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
615                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
616                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
617                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
618                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
619                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
620                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
621                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
622                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
623                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
624                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
625                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
626                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
627                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
628                                 379293C10F2DE73400B9034A /* treemap.h */,
629                                 379293C20F2DE73400B9034A /* treemap.cpp */,
630                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
631                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
632                         );
633                         name = containers;
634                         sourceTree = "<group>";
635                 };
636                 37D928B10F213472001D4494 /* errorcheckor */ = {
637                         isa = PBXGroup;
638                         children = (
639                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
640                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
641                                 37D928500F21331F001D4494 /* validcalculator.h */,
642                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
643                                 37D928520F21331F001D4494 /* validcommands.h */,
644                                 37D928510F21331F001D4494 /* validcommands.cpp */,
645                                 37D928540F21331F001D4494 /* validparameter.h */,
646                                 37D928530F21331F001D4494 /* validparameter.cpp */,
647                         );
648                         name = errorcheckor;
649                         sourceTree = "<group>";
650                 };
651                 C6859E8C029090F304C91782 /* Documentation */ = {
652                         isa = PBXGroup;
653                         children = (
654                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
655                         );
656                         name = Documentation;
657                         sourceTree = "<group>";
658                 };
659 /* End PBXGroup section */
660
661 /* Begin PBXNativeTarget section */
662                 8DD76F620486A84900D96B5E /* mothur */ = {
663                         isa = PBXNativeTarget;
664                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
665                         buildPhases = (
666                                 8DD76F640486A84900D96B5E /* Sources */,
667                                 8DD76F660486A84900D96B5E /* Frameworks */,
668                                 8DD76F690486A84900D96B5E /* CopyFiles */,
669                         );
670                         buildRules = (
671                         );
672                         dependencies = (
673                         );
674                         name = mothur;
675                         productInstallPath = "$(HOME)/bin";
676                         productName = Mothur;
677                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
678                         productType = "com.apple.product-type.tool";
679                 };
680 /* End PBXNativeTarget section */
681
682 /* Begin PBXProject section */
683                 08FB7793FE84155DC02AAC07 /* Project object */ = {
684                         isa = PBXProject;
685                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
686                         compatibilityVersion = "Xcode 3.0";
687                         hasScannedForEncodings = 1;
688                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
689                         projectDirPath = "";
690                         projectRoot = "";
691                         targets = (
692                                 8DD76F620486A84900D96B5E /* mothur */,
693                         );
694                 };
695 /* End PBXProject section */
696
697 /* Begin PBXSourcesBuildPhase section */
698                 8DD76F640486A84900D96B5E /* Sources */ = {
699                         isa = PBXSourcesBuildPhase;
700                         buildActionMask = 2147483647;
701                         files = (
702                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
703                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
704                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
705                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
706                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
707                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
708                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
709                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
710                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
711                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
712                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
713                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
714                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
715                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
716                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
717                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
718                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
719                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
720                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
721                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
722                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
723                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
724                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
725                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
726                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
727                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
728                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
729                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
730                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
731                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
732                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
733                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
734                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
735                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
736                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
737                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
738                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
739                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
740                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
741                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
742                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
743                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
744                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
745                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
746                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
747                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
748                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
749                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
750                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
751                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
752                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
753                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
754                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
755                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
756                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
757                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
758                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
759                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
760                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
761                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
762                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
763                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
764                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
765                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
766                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
767                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
768                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
769                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
770                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
771                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
772                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
773                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
774                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
775                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
776                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
777                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
778                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
779                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
780                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
781                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
782                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
783                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
784                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
785                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
786                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
787                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
788                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
789                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
790                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
791                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
792                                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
793                                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
794                                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
795                                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
796                                 375873E70F7D63E90040F377 /* coverage.cpp in Sources */,
797                                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
798                                 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */,
799                                 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */,
800                                 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */,
801                                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */,
802                                 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */,
803                                 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */,
804                                 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */,
805                                 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */,
806                                 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
807                                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
808                         );
809                         runOnlyForDeploymentPostprocessing = 0;
810                 };
811 /* End PBXSourcesBuildPhase section */
812
813 /* Begin XCBuildConfiguration section */
814                 1DEB923208733DC60010E9CD /* Debug */ = {
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816                         buildSettings = {
817                                 COPY_PHASE_STRIP = NO;
818                                 GCC_DYNAMIC_NO_PIC = NO;
819                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
820                                 GCC_MODEL_TUNING = G5;
821                                 GCC_OPTIMIZATION_LEVEL = 0;
822                                 GCC_PREPROCESSOR_DEFINITIONS = (
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824                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
825                                 );
826                                 INSTALL_PATH = /usr/local/bin;
827                                 PRODUCT_NAME = mothur;
828                                 ZERO_LINK = YES;
829                         };
830                         name = Debug;
831                 };
832                 1DEB923308733DC60010E9CD /* Release */ = {
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834                         buildSettings = {
835                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
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837                                 INSTALL_PATH = /usr/local/bin;
838                                 PRODUCT_NAME = mothur;
839                         };
840                         name = Release;
841                 };
842                 1DEB923608733DC60010E9CD /* Debug */ = {
843                         isa = XCBuildConfiguration;
844                         buildSettings = {
845                                 GCC_OPTIMIZATION_LEVEL = 3;
846                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
847                                 GCC_WARN_UNUSED_VARIABLE = YES;
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849                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
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851                         name = Debug;
852                 };
853                 1DEB923708733DC60010E9CD /* Release */ = {
854                         isa = XCBuildConfiguration;
855                         buildSettings = {
856                                 ARCHS = (
857                                         ppc,
858                                         i386,
859                                 );
860                                 GCC_OPTIMIZATION_LEVEL = 0;
861                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
862                                 GCC_WARN_UNUSED_VARIABLE = YES;
863                                 PREBINDING = NO;
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866                         name = Release;
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870 /* Begin XCConfigurationList section */
871                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
872                         isa = XCConfigurationList;
873                         buildConfigurations = (
874                                 1DEB923208733DC60010E9CD /* Debug */,
875                                 1DEB923308733DC60010E9CD /* Release */,
876                         );
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878                         defaultConfigurationName = Release;
879                 };
880                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
881                         isa = XCConfigurationList;
882                         buildConfigurations = (
883                                 1DEB923608733DC60010E9CD /* Debug */,
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885                         );
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887                         defaultConfigurationName = Release;
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889 /* End XCConfigurationList section */
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891         rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
892 }