Mothur.xcodeproj/project.pbxproj

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 297                 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
 298                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
 299                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
 300                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
 301                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
 302                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
 303                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
 304                 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
 305 /* End PBXFileReference section */
 306
 307 /* Begin PBXFrameworksBuildPhase section */
 308                 8DD76F660486A84900D96B5E /* Frameworks */ = {
 309                         isa = PBXFrameworksBuildPhase;
 310                         buildActionMask = 2147483647;
 311                         files = (
 312                         );
 313                         runOnlyForDeploymentPostprocessing = 0;
 314                 };
 315 /* End PBXFrameworksBuildPhase section */
 316
 317 /* Begin PBXGroup section */
 318                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
 319                         isa = PBXGroup;
 320                         children = (
 321                                 08FB7795FE84155DC02AAC07 /* Source */,
 322                                 C6859E8C029090F304C91782 /* Documentation */,
 323                                 1AB674ADFE9D54B511CA2CBB /* Products */,
 324                         );
 325                         name = Mothur;
 326                         sourceTree = "<group>";
 327                 };
 328                 08FB7795FE84155DC02AAC07 /* Source */ = {
 329                         isa = PBXGroup;
 330                         children = (
 331                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
 332                                 37D928A60F2133C0001D4494 /* calculators */,
 333                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 334                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 335                                 37D928A90F2133E5001D4494 /* commands */,
 336                                 37D927C60F21331F001D4494 /* collect.h */,
 337                                 37D927C50F21331F001D4494 /* collect.cpp */,
 338                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 339                                 37D928AC0F213420001D4494 /* containers */,
 340                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
 341                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
 342                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
 343                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
 344                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 345                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 346                                 37D927D40F21331F001D4494 /* database.hpp */,
 347                                 37D927D30F21331F001D4494 /* database.cpp */,
 348                                 37D927D60F21331F001D4494 /* display.h */,
 349                                 37D927D80F21331F001D4494 /* engine.hpp */,
 350                                 37D927D70F21331F001D4494 /* engine.cpp */,
 351                                 37D928B10F213472001D4494 /* errorcheckor */,
 352                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 353                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 354                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 355                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 356                                 37D927E60F21331F001D4494 /* inputdata.h */,
 357                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 358                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 359                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 360                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 361                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 362                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
 363                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 364                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 365                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 366                                 37D927F60F21331F001D4494 /* observable.h */,
 367                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 368                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 369                                 37D928040F21331F001D4494 /* raredisplay.h */,
 370                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 371                                 37D928060F21331F001D4494 /* rarefact.h */,
 372                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 373                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 374                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 375                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 376                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 377                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 378                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 379                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 380                                 37D928210F21331F001D4494 /* shared.h */,
 381                                 37D928200F21331F001D4494 /* shared.cpp */,
 382                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 383                                 37D928480F21331F001D4494 /* summarydata.h */,
 384                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 385                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 386                         );
 387                         name = Source;
 388                         sourceTree = "<group>";
 389                 };
 390                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 391                         isa = PBXGroup;
 392                         children = (
 393                                 8DD76F6C0486A84900D96B5E /* mothur */,
 394                         );
 395                         name = Products;
 396                         sourceTree = "<group>";
 397                 };
 398                 37D928A60F2133C0001D4494 /* calculators */ = {
 399                         isa = PBXGroup;
 400                         children = (
 401                                 37D927BE0F21331F001D4494 /* calculator.h */,
 402                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 403                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 404                                 37D927B90F21331F001D4494 /* ace.h */,
 405                                 37D927B80F21331F001D4494 /* ace.cpp */,
 406                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 407                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 408                                 37D927C00F21331F001D4494 /* chao1.h */,
 409                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 410                                 37D927E80F21331F001D4494 /* jackknife.h */,
 411                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 412                                 37D927F50F21331F001D4494 /* npshannon.h */,
 413                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 414                                 379294880F2E258500B9034A /* parsimony.h */,
 415                                 379294890F2E258500B9034A /* parsimony.cpp */,
 416                                 37D928020F21331F001D4494 /* rarecalc.h */,
 417                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 418                                 37D9281F0F21331F001D4494 /* shannon.h */,
 419                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 420                                 37D928230F21331F001D4494 /* sharedace.h */,
 421                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 422                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 423                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 424                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 425                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 426                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 427                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 428                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 429                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 430                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 431                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 432                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
 433                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
 434                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 435                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 436                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 437                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 438                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 439                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 440                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 441                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 442                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 443                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 444                                 37D928410F21331F001D4494 /* simpson.h */,
 445                                 37D928400F21331F001D4494 /* simpson.cpp */,
 446                                 37D928430F21331F001D4494 /* sobs.h */,
 447                                 374610810F40652400460C57 /* unweighted.h */,
 448                                 374610820F40652400460C57 /* unweighted.cpp */,
 449                                 37D9284E0F21331F001D4494 /* uvest.h */,
 450                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 451                                 3746107C0F4064D100460C57 /* weighted.h */,
 452                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 453                         );
 454                         name = calculators;
 455                         sourceTree = "<group>";
 456                 };
 457                 37D928A90F2133E5001D4494 /* commands */ = {
 458                         isa = PBXGroup;
 459                         children = (
 460                                 37D927CD0F21331F001D4494 /* command.hpp */,
 461                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 462                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 463                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 464                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 465                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 466                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 467                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 468                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 469                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
 470                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
 471                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
 472                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
 473                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
 474                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
 475                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 476                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 477                                 37D927F30F21331F001D4494 /* nocommand.h */,
 478                                 37D927F20F21331F001D4494 /* nocommand.cpp */,
 479                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 480                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 481                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 482                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 483                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 484                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 485                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 486                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 487                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 488                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 489                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 490                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 491                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 492                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 493                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 494                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 495                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 496                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 497                                 37D928470F21331F001D4494 /* summarycommand.h */,
 498                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 499                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 500                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 501                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 502                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 503                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 504                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 505                         );
 506                         name = commands;
 507                         sourceTree = "<group>";
 508                 };
 509                 37D928AC0F213420001D4494 /* containers */ = {
 510                         isa = PBXGroup;
 511                         children = (
 512                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 513                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 514                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 515                                 3782163B0F616079008E1F6D /* fullmatrix.h */,
 516                                 3782163C0F616079008E1F6D /* fullmatrix.cpp */,
 517                                 37D927E20F21331F001D4494 /* groupmap.h */,
 518                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 519                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 520                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 521                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 522                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 523                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 524                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 525                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 526                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 527                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 528                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 529                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 530                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 531                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 532                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 533                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 534                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 535                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 536                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 537                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 538                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 539                                 379293C10F2DE73400B9034A /* treemap.h */,
 540                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 541                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 542                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 543                         );
 544                         name = containers;
 545                         sourceTree = "<group>";
 546                 };
 547                 37D928B10F213472001D4494 /* errorcheckor */ = {
 548                         isa = PBXGroup;
 549                         children = (
 550                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 551                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 552                                 37D928500F21331F001D4494 /* validcalculator.h */,
 553                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 554                                 37D928520F21331F001D4494 /* validcommands.h */,
 555                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 556                                 37D928540F21331F001D4494 /* validparameter.h */,
 557                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 558                         );
 559                         name = errorcheckor;
 560                         sourceTree = "<group>";
 561                 };
 562                 C6859E8C029090F304C91782 /* Documentation */ = {
 563                         isa = PBXGroup;
 564                         children = (
 565                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 566                         );
 567                         name = Documentation;
 568                         sourceTree = "<group>";
 569                 };
 570 /* End PBXGroup section */
 571
 572 /* Begin PBXNativeTarget section */
 573                 8DD76F620486A84900D96B5E /* mothur */ = {
 574                         isa = PBXNativeTarget;
 575                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 576                         buildPhases = (
 577                                 8DD76F640486A84900D96B5E /* Sources */,
 578                                 8DD76F660486A84900D96B5E /* Frameworks */,
 579                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 580                         );
 581                         buildRules = (
 582                         );
 583                         dependencies = (
 584                         );
 585                         name = mothur;
 586                         productInstallPath = "$(HOME)/bin";
 587                         productName = Mothur;
 588                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 589                         productType = "com.apple.product-type.tool";
 590                 };
 591 /* End PBXNativeTarget section */
 592
 593 /* Begin PBXProject section */
 594                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 595                         isa = PBXProject;
 596                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 597                         compatibilityVersion = "Xcode 3.0";
 598                         hasScannedForEncodings = 1;
 599                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 600                         projectDirPath = "";
 601                         projectRoot = "";
 602                         targets = (
 603                                 8DD76F620486A84900D96B5E /* mothur */,
 604                         );
 605                 };
 606 /* End PBXProject section */
 607
 608 /* Begin PBXSourcesBuildPhase section */
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 610                         isa = PBXSourcesBuildPhase;
 611                         buildActionMask = 2147483647;
 612                         files = (
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 615                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
 616                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
 617                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 618                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 619                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 620                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 621                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 622                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 623                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
 624                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
 625                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 626                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 627                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
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 629                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
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 631                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
 632                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
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 634                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 635                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
 636                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
 637                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
 638                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
 639                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
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 643                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
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 645                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
 646                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
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 651                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
 652                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
 653                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
 654                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
 655                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
 656                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
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 659                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
 660                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
 661                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
 662                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
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 665                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
 666                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
 667                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
 668                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
 669                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
 670                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
 671                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
 672                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
 673                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
 674                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
 675                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
 676                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
 677                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
 678                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
 679                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
 680                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
 681                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
 682                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
 683                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
 684                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
 685                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
 686                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
 687                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
 688                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
 689                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
 690                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
 691                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
 692                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
 693                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
 694                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
 695                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
 696                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
 697                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
 698                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
 699                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
 700                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
 701                                 3782163D0F616079008E1F6D /* fullmatrix.cpp in Sources */,
 702                         );
 703                         runOnlyForDeploymentPostprocessing = 0;
 704                 };
 705 /* End PBXSourcesBuildPhase section */
 706
 707 /* Begin XCBuildConfiguration section */
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 709                         isa = XCBuildConfiguration;
 710                         buildSettings = {
 711                                 COPY_PHASE_STRIP = NO;
 712                                 GCC_DYNAMIC_NO_PIC = NO;
 713                                 GCC_ENABLE_FIX_AND_CONTINUE = YES;
 714                                 GCC_MODEL_TUNING = G5;
 715                                 GCC_OPTIMIZATION_LEVEL = 3;
 716                                 GCC_PREPROCESSOR_DEFINITIONS = (
 717                                         "_GLIBCXX_DEBUG=1",
 718                                         "_GLIBCXX_DEBUG_PEDANTIC=1",
 719                                 );
 720                                 INSTALL_PATH = /usr/local/bin;
 721                                 PRODUCT_NAME = mothur;
 722                                 ZERO_LINK = YES;
 723                         };
 724                         name = Debug;
 725                 };
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 727                         isa = XCBuildConfiguration;
 728                         buildSettings = {
 729                                 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
 730                                 GCC_MODEL_TUNING = G5;
 731                                 GCC_OPTIMIZATION_LEVEL = 3;
 732                                 INSTALL_PATH = /usr/local/bin;
 733                                 PRODUCT_NAME = mothur;
 734                         };
 735                         name = Release;
 736                 };
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 738                         isa = XCBuildConfiguration;
 739                         buildSettings = {
 740                                 GCC_OPTIMIZATION_LEVEL = 3;
 741                                 GCC_WARN_ABOUT_RETURN_TYPE = YES;
 742                                 GCC_WARN_UNUSED_VARIABLE = YES;
 743                                 INSTALL_MODE_FLAG = "a-w,a+rX";
 744                                 PREBINDING = NO;
 745                                 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
 746                         };
 747                         name = Debug;
 748                 };
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 752                                 ARCHS = (
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 765 /* End XCBuildConfiguration section */
 766
 767 /* Begin XCConfigurationList section */
 768                 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
 769                         isa = XCConfigurationList;
 770                         buildConfigurations = (
 771                                 1DEB923208733DC60010E9CD /* Debug */,
 772                                 1DEB923308733DC60010E9CD /* Release */,
 773                         );
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 775                         defaultConfigurationName = Release;
 776                 };
 777                 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
 778                         isa = XCConfigurationList;
 779                         buildConfigurations = (
 780                                 1DEB923608733DC60010E9CD /* Debug */,
 781                                 1DEB923708733DC60010E9CD /* Release */,
 782                         );
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 784                         defaultConfigurationName = Release;
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 786 /* End XCConfigurationList section */
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 789 }