9 /* Begin PBXBuildFile section */
10 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E126F0F26365B0095CF7E /* readotucommand.cpp */; };
11 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12950F263D5A0095CF7E /* readdistcommand.cpp */; };
12 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12EC0F264D320095CF7E /* commandfactory.cpp */; };
13 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610770F40645300460C57 /* unifracweightedcommand.cpp */; };
14 3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; };
15 374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; };
16 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
17 379293C30F2DE73400B9034A /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379293C20F2DE73400B9034A /* treemap.cpp */; };
18 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3792946F0F2E191800B9034A /* parsimonycommand.cpp */; };
19 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379294890F2E258500B9034A /* parsimony.cpp */; };
20 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */; };
21 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */; };
22 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */; };
23 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */; };
24 37AFC7A30F44703E005F492D /* readsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AFC7A20F44703E005F492D /* readsharedcommand.cpp */; };
25 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37B28F670F27590100808A62 /* deconvolutecommand.cpp */; };
26 37D928550F21331F001D4494 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927B80F21331F001D4494 /* ace.cpp */; };
27 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BA0F21331F001D4494 /* averagelinkage.cpp */; };
28 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BB0F21331F001D4494 /* bootstrap.cpp */; };
29 37D928580F21331F001D4494 /* calculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BD0F21331F001D4494 /* calculator.cpp */; };
30 37D928590F21331F001D4494 /* chao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BF0F21331F001D4494 /* chao1.cpp */; };
31 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C10F21331F001D4494 /* cluster.cpp */; };
32 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C30F21331F001D4494 /* clustercommand.cpp */; };
33 37D9285C0F21331F001D4494 /* collect.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C50F21331F001D4494 /* collect.cpp */; };
34 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C70F21331F001D4494 /* collectcommand.cpp */; };
35 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */; };
36 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D00F21331F001D4494 /* commandoptionparser.cpp */; };
37 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D20F21331F001D4494 /* completelinkage.cpp */; };
38 37D928620F21331F001D4494 /* database.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D30F21331F001D4494 /* database.cpp */; };
39 37D928630F21331F001D4494 /* engine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D70F21331F001D4494 /* engine.cpp */; };
40 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D90F21331F001D4494 /* errorchecking.cpp */; };
41 37D928650F21331F001D4494 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DB0F21331F001D4494 /* fastamap.cpp */; };
42 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DD0F21331F001D4494 /* fileoutput.cpp */; };
43 37D928670F21331F001D4494 /* globaldata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DF0F21331F001D4494 /* globaldata.cpp */; };
44 37D928680F21331F001D4494 /* groupmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E10F21331F001D4494 /* groupmap.cpp */; };
45 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E30F21331F001D4494 /* helpcommand.cpp */; };
46 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E50F21331F001D4494 /* inputdata.cpp */; };
47 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E70F21331F001D4494 /* jackknife.cpp */; };
48 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E90F21331F001D4494 /* kmer.cpp */; };
49 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EB0F21331F001D4494 /* kmerdb.cpp */; };
50 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927ED0F21331F001D4494 /* listvector.cpp */; };
51 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EF0F21331F001D4494 /* mothur.cpp */; };
52 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F00F21331F001D4494 /* nameassignment.cpp */; };
53 37D928710F21331F001D4494 /* nocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F20F21331F001D4494 /* nocommand.cpp */; };
54 37D928720F21331F001D4494 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F40F21331F001D4494 /* npshannon.cpp */; };
55 37D928730F21331F001D4494 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F70F21331F001D4494 /* ordervector.cpp */; };
56 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F90F21331F001D4494 /* parselistcommand.cpp */; };
57 37D928750F21331F001D4494 /* progress.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FB0F21331F001D4494 /* progress.cpp */; };
58 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FD0F21331F001D4494 /* quitcommand.cpp */; };
59 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FF0F21331F001D4494 /* rabundvector.cpp */; };
60 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928010F21331F001D4494 /* rarecalc.cpp */; };
61 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928030F21331F001D4494 /* raredisplay.cpp */; };
62 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928050F21331F001D4494 /* rarefact.cpp */; };
63 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928070F21331F001D4494 /* rarefactcommand.cpp */; };
64 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */; };
65 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928120F21331F001D4494 /* readmatrix.cpp */; };
66 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281A0F21331F001D4494 /* sabundvector.cpp */; };
67 37D928850F21331F001D4494 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281C0F21331F001D4494 /* sequence.cpp */; };
68 37D928860F21331F001D4494 /* shannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281E0F21331F001D4494 /* shannon.cpp */; };
69 37D928870F21331F001D4494 /* shared.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928200F21331F001D4494 /* shared.cpp */; };
70 37D928880F21331F001D4494 /* sharedace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928220F21331F001D4494 /* sharedace.cpp */; };
71 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928240F21331F001D4494 /* sharedchao1.cpp */; };
72 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928260F21331F001D4494 /* sharedcommand.cpp */; };
73 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928280F21331F001D4494 /* sharedjabund.cpp */; };
74 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282A0F21331F001D4494 /* sharedjclass.cpp */; };
75 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282C0F21331F001D4494 /* sharedjest.cpp */; };
76 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282E0F21331F001D4494 /* sharedordervector.cpp */; };
77 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928300F21331F001D4494 /* sharedrabundvector.cpp */; };
78 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928320F21331F001D4494 /* sharedsabundvector.cpp */; };
79 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928340F21331F001D4494 /* sharedsobs.cpp */; };
80 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928360F21331F001D4494 /* sharedsorabund.cpp */; };
81 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928380F21331F001D4494 /* sharedsorclass.cpp */; };
82 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283A0F21331F001D4494 /* sharedsorest.cpp */; };
83 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283C0F21331F001D4494 /* sharedthetan.cpp */; };
84 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */; };
85 37D928970F21331F001D4494 /* simpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928400F21331F001D4494 /* simpson.cpp */; };
86 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928420F21331F001D4494 /* singlelinkage.cpp */; };
87 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928440F21331F001D4494 /* sparsematrix.cpp */; };
88 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928460F21331F001D4494 /* summarycommand.cpp */; };
89 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */; };
90 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284D0F21331F001D4494 /* uvest.cpp */; };
91 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284F0F21331F001D4494 /* validcalculator.cpp */; };
92 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928510F21331F001D4494 /* validcommands.cpp */; };
93 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928530F21331F001D4494 /* validparameter.cpp */; };
94 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F3E20F29FD4200F8D827 /* treenode.cpp */; };
95 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */; };
96 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6859E8B029090EE04C91782 /* Mothur.1 */; };
97 /* End PBXBuildFile section */
99 /* Begin PBXCopyFilesBuildPhase section */
100 8DD76F690486A84900D96B5E /* CopyFiles */ = {
101 isa = PBXCopyFilesBuildPhase;
103 dstPath = /usr/share/man/man1/;
104 dstSubfolderSpec = 0;
106 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */,
108 runOnlyForDeploymentPostprocessing = 1;
110 /* End PBXCopyFilesBuildPhase section */
112 /* Begin PBXFileReference section */
113 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
114 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
115 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
116 372E12950F263D5A0095CF7E /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
117 372E12EC0F264D320095CF7E /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = "<group>"; };
118 374610760F40645300460C57 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
119 374610770F40645300460C57 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
120 3746107C0F4064D100460C57 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
121 3746107D0F4064D100460C57 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
122 374610810F40652400460C57 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
123 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
124 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
125 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
126 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
127 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
128 3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
129 3792946F0F2E191800B9034A /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
130 379294880F2E258500B9034A /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
131 379294890F2E258500B9034A /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
132 3792948D0F2E271100B9034A /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
133 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
134 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
135 37AD4DB90F28E2FE00AA2D49 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
136 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
137 37AD4DC80F28F3DD00AA2D49 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
138 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
139 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
140 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
141 37AFC7A10F44703E005F492D /* readsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readsharedcommand.h; sourceTree = "<group>"; };
142 37AFC7A20F44703E005F492D /* readsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readsharedcommand.cpp; sourceTree = "<group>"; };
143 37B28F660F27590100808A62 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
144 37B28F670F27590100808A62 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
145 37D927B80F21331F001D4494 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
146 37D927B90F21331F001D4494 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
147 37D927BA0F21331F001D4494 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = "<group>"; };
148 37D927BB0F21331F001D4494 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
149 37D927BC0F21331F001D4494 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
150 37D927BD0F21331F001D4494 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
151 37D927BE0F21331F001D4494 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
152 37D927BF0F21331F001D4494 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
153 37D927C00F21331F001D4494 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
154 37D927C10F21331F001D4494 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
155 37D927C20F21331F001D4494 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
156 37D927C30F21331F001D4494 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
157 37D927C40F21331F001D4494 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
158 37D927C50F21331F001D4494 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = "<group>"; };
159 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
160 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
161 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
162 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
163 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
164 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
165 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
166 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
167 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
168 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
169 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
170 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
171 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
172 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
173 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
174 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
175 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
176 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
177 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
178 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
179 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
180 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
181 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
182 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
183 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
184 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
185 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
186 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
187 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
188 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
189 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
190 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
191 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
192 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
193 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
194 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
195 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
196 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
197 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
198 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
199 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
200 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
201 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
202 37D927F20F21331F001D4494 /* nocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommand.cpp; sourceTree = "<group>"; };
203 37D927F30F21331F001D4494 /* nocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommand.h; sourceTree = "<group>"; };
204 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
205 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
206 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
207 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
208 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
209 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
210 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
211 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
212 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
213 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
214 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
215 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
216 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
217 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
218 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
219 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
220 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
221 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
222 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
223 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
224 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
225 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
226 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
227 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
228 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
229 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
230 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
231 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
232 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
233 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
234 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
235 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
236 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
237 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
238 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
239 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
240 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
241 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
242 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
243 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
244 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
245 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
246 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
247 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
248 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
249 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
250 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
251 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
252 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
253 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
254 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
255 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
256 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
257 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
258 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
259 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
260 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
261 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
262 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
263 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
264 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
265 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
266 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
267 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
268 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
269 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
270 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
271 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
272 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
273 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
274 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
275 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
276 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
277 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
278 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
279 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
280 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
281 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
282 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
283 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
284 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
285 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
286 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
287 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
288 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
289 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
290 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
291 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
292 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
293 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
294 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
295 /* End PBXFileReference section */
297 /* Begin PBXFrameworksBuildPhase section */
298 8DD76F660486A84900D96B5E /* Frameworks */ = {
299 isa = PBXFrameworksBuildPhase;
300 buildActionMask = 2147483647;
303 runOnlyForDeploymentPostprocessing = 0;
305 /* End PBXFrameworksBuildPhase section */
307 /* Begin PBXGroup section */
308 08FB7794FE84155DC02AAC07 /* Mothur */ = {
311 08FB7795FE84155DC02AAC07 /* Source */,
312 C6859E8C029090F304C91782 /* Documentation */,
313 1AB674ADFE9D54B511CA2CBB /* Products */,
316 sourceTree = "<group>";
318 08FB7795FE84155DC02AAC07 /* Source */ = {
321 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
322 37D928A60F2133C0001D4494 /* calculators */,
323 37D927C20F21331F001D4494 /* cluster.hpp */,
324 37D927C10F21331F001D4494 /* cluster.cpp */,
325 37D928A90F2133E5001D4494 /* commands */,
326 37D927C60F21331F001D4494 /* collect.h */,
327 37D927C50F21331F001D4494 /* collect.cpp */,
328 37D927C90F21331F001D4494 /* collectdisplay.h */,
329 37D928AC0F213420001D4494 /* containers */,
330 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
331 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
332 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
333 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
334 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
335 37D927D20F21331F001D4494 /* completelinkage.cpp */,
336 37D927D40F21331F001D4494 /* database.hpp */,
337 37D927D30F21331F001D4494 /* database.cpp */,
338 37D927D60F21331F001D4494 /* display.h */,
339 37D927D80F21331F001D4494 /* engine.hpp */,
340 37D927D70F21331F001D4494 /* engine.cpp */,
341 37D928B10F213472001D4494 /* errorcheckor */,
342 37D927DE0F21331F001D4494 /* fileoutput.h */,
343 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
344 37D927E00F21331F001D4494 /* globaldata.hpp */,
345 37D927DF0F21331F001D4494 /* globaldata.cpp */,
346 37D927E60F21331F001D4494 /* inputdata.h */,
347 37D927E50F21331F001D4494 /* inputdata.cpp */,
348 37D927EA0F21331F001D4494 /* kmer.hpp */,
349 37D927E90F21331F001D4494 /* kmer.cpp */,
350 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
351 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
352 37D927EF0F21331F001D4494 /* mothur.cpp */,
353 37D927F10F21331F001D4494 /* nameassignment.hpp */,
354 37D927F00F21331F001D4494 /* nameassignment.cpp */,
355 37D927F60F21331F001D4494 /* observable.h */,
356 37D927FC0F21331F001D4494 /* progress.hpp */,
357 37D927FB0F21331F001D4494 /* progress.cpp */,
358 37D928040F21331F001D4494 /* raredisplay.h */,
359 37D928030F21331F001D4494 /* raredisplay.cpp */,
360 37D928060F21331F001D4494 /* rarefact.h */,
361 37D928050F21331F001D4494 /* rarefact.cpp */,
362 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
363 37D928130F21331F001D4494 /* readmatrix.hpp */,
364 37D928120F21331F001D4494 /* readmatrix.cpp */,
365 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
366 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
367 37D9281D0F21331F001D4494 /* sequence.hpp */,
368 37D9281C0F21331F001D4494 /* sequence.cpp */,
369 37D928210F21331F001D4494 /* shared.h */,
370 37D928200F21331F001D4494 /* shared.cpp */,
371 37D928420F21331F001D4494 /* singlelinkage.cpp */,
372 37D928450F21331F001D4494 /* sparsematrix.hpp */,
373 37D928440F21331F001D4494 /* sparsematrix.cpp */,
374 37D928480F21331F001D4494 /* summarydata.h */,
375 37D928490F21331F001D4494 /* summarydisplay.h */,
376 37D9284C0F21331F001D4494 /* utilities.hpp */,
379 sourceTree = "<group>";
381 1AB674ADFE9D54B511CA2CBB /* Products */ = {
384 8DD76F6C0486A84900D96B5E /* mothur */,
387 sourceTree = "<group>";
389 37D928A60F2133C0001D4494 /* calculators */ = {
392 37D927BE0F21331F001D4494 /* calculator.h */,
393 3792948D0F2E271100B9034A /* treecalculator.h */,
394 37D927BD0F21331F001D4494 /* calculator.cpp */,
395 37D927B90F21331F001D4494 /* ace.h */,
396 37D927B80F21331F001D4494 /* ace.cpp */,
397 37D927BC0F21331F001D4494 /* bootstrap.h */,
398 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
399 37D927C00F21331F001D4494 /* chao1.h */,
400 37D927BF0F21331F001D4494 /* chao1.cpp */,
401 37D927E80F21331F001D4494 /* jackknife.h */,
402 37D927E70F21331F001D4494 /* jackknife.cpp */,
403 37D927F50F21331F001D4494 /* npshannon.h */,
404 37D927F40F21331F001D4494 /* npshannon.cpp */,
405 379294880F2E258500B9034A /* parsimony.h */,
406 379294890F2E258500B9034A /* parsimony.cpp */,
407 37D928020F21331F001D4494 /* rarecalc.h */,
408 37D928010F21331F001D4494 /* rarecalc.cpp */,
409 37D9281F0F21331F001D4494 /* shannon.h */,
410 37D9281E0F21331F001D4494 /* shannon.cpp */,
411 37D928230F21331F001D4494 /* sharedace.h */,
412 37D928220F21331F001D4494 /* sharedace.cpp */,
413 37D928250F21331F001D4494 /* sharedchao1.h */,
414 37D928240F21331F001D4494 /* sharedchao1.cpp */,
415 37D928290F21331F001D4494 /* sharedjabund.h */,
416 37D928280F21331F001D4494 /* sharedjabund.cpp */,
417 37D9282B0F21331F001D4494 /* sharedjclass.h */,
418 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
419 37D9282D0F21331F001D4494 /* sharedjest.h */,
420 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
421 37D928350F21331F001D4494 /* sharedsobs.h */,
422 37D928340F21331F001D4494 /* sharedsobs.cpp */,
423 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
424 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
425 37D928370F21331F001D4494 /* sharedsorabund.h */,
426 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
427 37D928390F21331F001D4494 /* sharedsorclass.h */,
428 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
429 37D9283B0F21331F001D4494 /* sharedsorest.h */,
430 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
431 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
432 37D9283D0F21331F001D4494 /* sharedthetan.h */,
433 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
434 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
435 37D928410F21331F001D4494 /* simpson.h */,
436 37D928400F21331F001D4494 /* simpson.cpp */,
437 37D928430F21331F001D4494 /* sobs.h */,
438 374610810F40652400460C57 /* unweighted.h */,
439 374610820F40652400460C57 /* unweighted.cpp */,
440 37D9284E0F21331F001D4494 /* uvest.h */,
441 37D9284D0F21331F001D4494 /* uvest.cpp */,
442 3746107C0F4064D100460C57 /* weighted.h */,
443 3746107D0F4064D100460C57 /* weighted.cpp */,
446 sourceTree = "<group>";
448 37D928A90F2133E5001D4494 /* commands */ = {
451 37D927CD0F21331F001D4494 /* command.hpp */,
452 37D927C40F21331F001D4494 /* clustercommand.h */,
453 37D927C30F21331F001D4494 /* clustercommand.cpp */,
454 37D927C80F21331F001D4494 /* collectcommand.h */,
455 37D927C70F21331F001D4494 /* collectcommand.cpp */,
456 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
457 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
458 37B28F660F27590100808A62 /* deconvolutecommand.h */,
459 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
460 37D927E40F21331F001D4494 /* helpcommand.h */,
461 37D927E30F21331F001D4494 /* helpcommand.cpp */,
462 37D927F20F21331F001D4494 /* nocommand.cpp */,
463 37D927F30F21331F001D4494 /* nocommand.h */,
464 37D927FA0F21331F001D4494 /* parselistcommand.h */,
465 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
466 3792946E0F2E191800B9034A /* parsimonycommand.h */,
467 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
468 37D927FE0F21331F001D4494 /* quitcommand.h */,
469 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
470 37D928080F21331F001D4494 /* rarefactcommand.h */,
471 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
472 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
473 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
474 372E12940F263D5A0095CF7E /* readdistcommand.h */,
475 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
476 372E126E0F26365B0095CF7E /* readotucommand.h */,
477 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
478 37AFC7A10F44703E005F492D /* readsharedcommand.h */,
479 37AFC7A20F44703E005F492D /* readsharedcommand.cpp */,
480 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
481 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
482 37D928270F21331F001D4494 /* sharedcommand.h */,
483 37D928260F21331F001D4494 /* sharedcommand.cpp */,
484 37D928470F21331F001D4494 /* summarycommand.h */,
485 37D928460F21331F001D4494 /* summarycommand.cpp */,
486 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
487 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
488 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
489 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
490 374610760F40645300460C57 /* unifracweightedcommand.h */,
491 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
494 sourceTree = "<group>";
496 37D928AC0F213420001D4494 /* containers */ = {
499 37D927D50F21331F001D4494 /* datavector.hpp */,
500 37D927DC0F21331F001D4494 /* fastamap.h */,
501 37D927DB0F21331F001D4494 /* fastamap.cpp */,
502 37D927E20F21331F001D4494 /* groupmap.h */,
503 37D927E10F21331F001D4494 /* groupmap.cpp */,
504 37D927EE0F21331F001D4494 /* listvector.hpp */,
505 37D927ED0F21331F001D4494 /* listvector.cpp */,
506 37D927F80F21331F001D4494 /* ordervector.hpp */,
507 37D927F70F21331F001D4494 /* ordervector.cpp */,
508 37D928000F21331F001D4494 /* rabundvector.hpp */,
509 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
510 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
511 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
512 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
513 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
514 37D9282F0F21331F001D4494 /* sharedordervector.h */,
515 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
516 37D928310F21331F001D4494 /* sharedrabundvector.h */,
517 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
518 37D928330F21331F001D4494 /* sharedsabundvector.h */,
519 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
520 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
521 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
522 379293C10F2DE73400B9034A /* treemap.h */,
523 379293C20F2DE73400B9034A /* treemap.cpp */,
524 37E5F3E10F29FD4200F8D827 /* treenode.h */,
525 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
528 sourceTree = "<group>";
530 37D928B10F213472001D4494 /* errorcheckor */ = {
533 37D927DA0F21331F001D4494 /* errorchecking.h */,
534 37D927D90F21331F001D4494 /* errorchecking.cpp */,
535 37D928500F21331F001D4494 /* validcalculator.h */,
536 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
537 37D928520F21331F001D4494 /* validcommands.h */,
538 37D928510F21331F001D4494 /* validcommands.cpp */,
539 37D928540F21331F001D4494 /* validparameter.h */,
540 37D928530F21331F001D4494 /* validparameter.cpp */,
543 sourceTree = "<group>";
545 C6859E8C029090F304C91782 /* Documentation */ = {
548 C6859E8B029090EE04C91782 /* Mothur.1 */,
550 name = Documentation;
551 sourceTree = "<group>";
553 /* End PBXGroup section */
555 /* Begin PBXNativeTarget section */
556 8DD76F620486A84900D96B5E /* mothur */ = {
557 isa = PBXNativeTarget;
558 buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
560 8DD76F640486A84900D96B5E /* Sources */,
561 8DD76F660486A84900D96B5E /* Frameworks */,
562 8DD76F690486A84900D96B5E /* CopyFiles */,
569 productInstallPath = "$(HOME)/bin";
570 productName = Mothur;
571 productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
572 productType = "com.apple.product-type.tool";
574 /* End PBXNativeTarget section */
576 /* Begin PBXProject section */
577 08FB7793FE84155DC02AAC07 /* Project object */ = {
579 buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
580 compatibilityVersion = "Xcode 3.0";
581 hasScannedForEncodings = 1;
582 mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
586 8DD76F620486A84900D96B5E /* mothur */,
589 /* End PBXProject section */
591 /* Begin PBXSourcesBuildPhase section */
592 8DD76F640486A84900D96B5E /* Sources */ = {
593 isa = PBXSourcesBuildPhase;
594 buildActionMask = 2147483647;
596 37D928550F21331F001D4494 /* ace.cpp in Sources */,
597 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
598 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
599 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
600 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
601 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
602 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
603 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
604 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
605 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
606 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
607 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
608 37D928620F21331F001D4494 /* database.cpp in Sources */,
609 37D928630F21331F001D4494 /* engine.cpp in Sources */,
610 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
611 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
612 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
613 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
614 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
615 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
616 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
617 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
618 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
619 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
620 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
621 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
622 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
623 37D928710F21331F001D4494 /* nocommand.cpp in Sources */,
624 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
625 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
626 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
627 37D928750F21331F001D4494 /* progress.cpp in Sources */,
628 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
629 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
630 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
631 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
632 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
633 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
634 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
635 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
636 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
637 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
638 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
639 37D928870F21331F001D4494 /* shared.cpp in Sources */,
640 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
641 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
642 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
643 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
644 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
645 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
646 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
647 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
648 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
649 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
650 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
651 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
652 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
653 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
654 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
655 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
656 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
657 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
658 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
659 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
660 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
661 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
662 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
663 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
664 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
665 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
666 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
667 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
668 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
669 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
670 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
671 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
672 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
673 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
674 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
675 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
676 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
677 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
678 374610830F40652400460C57 /* unweighted.cpp in Sources */,
679 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
680 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
681 37AFC7A30F44703E005F492D /* readsharedcommand.cpp in Sources */,
683 runOnlyForDeploymentPostprocessing = 0;
685 /* End PBXSourcesBuildPhase section */
687 /* Begin XCBuildConfiguration section */
688 1DEB923208733DC60010E9CD /* Debug */ = {
689 isa = XCBuildConfiguration;
691 COPY_PHASE_STRIP = NO;
692 GCC_DYNAMIC_NO_PIC = NO;
693 GCC_ENABLE_FIX_AND_CONTINUE = YES;
694 GCC_MODEL_TUNING = G5;
695 GCC_OPTIMIZATION_LEVEL = 3;
696 GCC_PREPROCESSOR_DEFINITIONS = (
698 "_GLIBCXX_DEBUG_PEDANTIC=1",
700 INSTALL_PATH = /usr/local/bin;
701 PRODUCT_NAME = mothur;
706 1DEB923308733DC60010E9CD /* Release */ = {
707 isa = XCBuildConfiguration;
709 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
710 GCC_MODEL_TUNING = G5;
711 GCC_OPTIMIZATION_LEVEL = 3;
712 INSTALL_PATH = /usr/local/bin;
713 PRODUCT_NAME = mothur;
717 1DEB923608733DC60010E9CD /* Debug */ = {
718 isa = XCBuildConfiguration;
720 GCC_OPTIMIZATION_LEVEL = 3;
721 GCC_WARN_ABOUT_RETURN_TYPE = YES;
722 GCC_WARN_UNUSED_VARIABLE = YES;
724 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
728 1DEB923708733DC60010E9CD /* Release */ = {
729 isa = XCBuildConfiguration;
735 GCC_OPTIMIZATION_LEVEL = 0;
736 GCC_WARN_ABOUT_RETURN_TYPE = YES;
737 GCC_WARN_UNUSED_VARIABLE = YES;
739 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
743 /* End XCBuildConfiguration section */
745 /* Begin XCConfigurationList section */
746 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
747 isa = XCConfigurationList;
748 buildConfigurations = (
749 1DEB923208733DC60010E9CD /* Debug */,
750 1DEB923308733DC60010E9CD /* Release */,
752 defaultConfigurationIsVisible = 0;
753 defaultConfigurationName = Release;
755 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
756 isa = XCConfigurationList;
757 buildConfigurations = (
758 1DEB923608733DC60010E9CD /* Debug */,
759 1DEB923708733DC60010E9CD /* Release */,
761 defaultConfigurationIsVisible = 0;
762 defaultConfigurationName = Release;
764 /* End XCConfigurationList section */
766 rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;