Mothur.xcodeproj/project.pbxproj

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 224                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
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 231                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
 232                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
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 234                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
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 236                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
 237                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
 238                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
 239                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
 240                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
 241                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
 242                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
 243                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
 244                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
 245                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
 246                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
 247                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
 248                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
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 250                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
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 252                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
 253                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
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 256                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
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 260                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
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 290                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
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 296                 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
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 316                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
 317                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
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 320                 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
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 322                 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
 323                 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
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 329                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
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 340 /* End PBXFileReference section */
 341
 342 /* Begin PBXFrameworksBuildPhase section */
 343                 8DD76F660486A84900D96B5E /* Frameworks */ = {
 344                         isa = PBXFrameworksBuildPhase;
 345                         buildActionMask = 2147483647;
 346                         files = (
 347                         );
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 349                 };
 350 /* End PBXFrameworksBuildPhase section */
 351
 352 /* Begin PBXGroup section */
 353                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
 354                         isa = PBXGroup;
 355                         children = (
 356                                 08FB7795FE84155DC02AAC07 /* Source */,
 357                                 C6859E8C029090F304C91782 /* Documentation */,
 358                                 1AB674ADFE9D54B511CA2CBB /* Products */,
 359                         );
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 361                         sourceTree = "<group>";
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 364                         isa = PBXGroup;
 365                         children = (
 366                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
 367                                 37D928A60F2133C0001D4494 /* calculators */,
 368                                 37D927C20F21331F001D4494 /* cluster.hpp */,
 369                                 37D927C10F21331F001D4494 /* cluster.cpp */,
 370                                 37D928A90F2133E5001D4494 /* commands */,
 371                                 37D927C60F21331F001D4494 /* collect.h */,
 372                                 37D927C50F21331F001D4494 /* collect.cpp */,
 373                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
 374                                 37D928AC0F213420001D4494 /* containers */,
 375                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
 376                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
 377                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
 378                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
 379                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 380                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 381                                 37D927D40F21331F001D4494 /* database.hpp */,
 382                                 37D927D30F21331F001D4494 /* database.cpp */,
 383                                 37D927D60F21331F001D4494 /* display.h */,
 384                                 37D927D80F21331F001D4494 /* engine.hpp */,
 385                                 37D927D70F21331F001D4494 /* engine.cpp */,
 386                                 37D928B10F213472001D4494 /* errorcheckor */,
 387                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 388                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 389                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 390                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 391                                 3765B5440F7A62A000C3EDC5 /* heatmap.h */,
 392                                 3765B5450F7A62A000C3EDC5 /* heatmap.cpp */,
 393                                 37D927E60F21331F001D4494 /* inputdata.h */,
 394                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 395                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 396                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 397                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 398                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 399                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
 400                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 401                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 402                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 403                                 37D927F60F21331F001D4494 /* observable.h */,
 404                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 405                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 406                                 37D928040F21331F001D4494 /* raredisplay.h */,
 407                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 408                                 37D928060F21331F001D4494 /* rarefact.h */,
 409                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 410                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 411                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 412                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 413                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 414                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 415                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 416                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 417                                 37D928210F21331F001D4494 /* shared.h */,
 418                                 37D928200F21331F001D4494 /* shared.cpp */,
 419                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 420                                 37D928480F21331F001D4494 /* summarydata.h */,
 421                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 422                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 423                         );
 424                         name = Source;
 425                         sourceTree = "<group>";
 426                 };
 427                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 428                         isa = PBXGroup;
 429                         children = (
 430                                 8DD76F6C0486A84900D96B5E /* mothur */,
 431                         );
 432                         name = Products;
 433                         sourceTree = "<group>";
 434                 };
 435                 37D928A60F2133C0001D4494 /* calculators */ = {
 436                         isa = PBXGroup;
 437                         children = (
 438                                 37D927BE0F21331F001D4494 /* calculator.h */,
 439                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 440                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 441                                 37D927B90F21331F001D4494 /* ace.h */,
 442                                 37D927B80F21331F001D4494 /* ace.cpp */,
 443                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 444                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 445                                 37D927C00F21331F001D4494 /* chao1.h */,
 446                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 447                                 374CD6EF0F65A4C100D90B4A /* coverage.h */,
 448                                 374CD6F00F65A4C100D90B4A /* coverage.cpp */,
 449                                 37D927E80F21331F001D4494 /* jackknife.h */,
 450                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 451                                 37D927F50F21331F001D4494 /* npshannon.h */,
 452                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 453                                 370936DE0F6E7A4A00EB4C2C /* nseqs.h */,
 454                                 379294880F2E258500B9034A /* parsimony.h */,
 455                                 379294890F2E258500B9034A /* parsimony.cpp */,
 456                                 37D928020F21331F001D4494 /* rarecalc.h */,
 457                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 458                                 37D9281F0F21331F001D4494 /* shannon.h */,
 459                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 460                                 37D928230F21331F001D4494 /* sharedace.h */,
 461                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 462                                 3765B5140F780A7F00C3EDC5 /* sharedanderberg.h */,
 463                                 3765B5150F780A7F00C3EDC5 /* sharedanderberg.cpp */,
 464                                 2175956F0F792A33001CC3C6 /* sharedbraycurtis.h */,
 465                                 217595700F792A33001CC3C6 /* sharedbraycurtis.cpp */,
 466                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 467                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 468                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 469                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 470                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 471                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 472                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 473                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 474                                 217595310F791EEE001CC3C6 /* sharedkulczynski.h */,
 475                                 217595320F791EEE001CC3C6 /* sharedkulczynski.cpp */,
 476                                 2175953D0F792111001CC3C6 /* sharedkulczynskicody.h */,
 477                                 2175953E0F792111001CC3C6 /* sharedkulczynskicody.cpp */,
 478                                 217595570F792490001CC3C6 /* sharedlennon.h */,
 479                                 217595580F792490001CC3C6 /* sharedlennon.cpp */,
 480                                 217595620F7927BB001CC3C6 /* sharedmorisitahorn.h */,
 481                                 217595630F7927BB001CC3C6 /* sharedmorisitahorn.cpp */,
 482                                 3709370A0F6E7FC100EB4C2C /* sharednseqs.h */,
 483                                 3765B4E00F78055000C3EDC5 /* sharedochiai.h */,
 484                                 3765B4E10F78055000C3EDC5 /* sharedochiai.cpp */,
 485                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 486                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 487                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
 488                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
 489                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 490                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 491                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 492                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 493                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 494                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 495                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 496                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 497                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 498                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 499                                 37D928410F21331F001D4494 /* simpson.h */,
 500                                 37D928400F21331F001D4494 /* simpson.cpp */,
 501                                 37D928430F21331F001D4494 /* sobs.h */,
 502                                 374610810F40652400460C57 /* unweighted.h */,
 503                                 374610820F40652400460C57 /* unweighted.cpp */,
 504                                 37D9284E0F21331F001D4494 /* uvest.h */,
 505                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 506                                 3746107C0F4064D100460C57 /* weighted.h */,
 507                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 508                         );
 509                         name = calculators;
 510                         sourceTree = "<group>";
 511                 };
 512                 37D928A90F2133E5001D4494 /* commands */ = {
 513                         isa = PBXGroup;
 514                         children = (
 515                                 37D927CD0F21331F001D4494 /* command.hpp */,
 516                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 517                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 518                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 519                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 520                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 521                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 522                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 523                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 524                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
 525                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
 526                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
 527                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
 528                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
 529                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
 530                                 3765B5360F7A5A9E00C3EDC5 /* heatmapcommand.h */,
 531                                 3765B5370F7A5A9E00C3EDC5 /* heatmapcommand.cpp */,
 532                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 533                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 534                                 374CD63D0F65832000D90B4A /* libshuffcommand.h */,
 535                                 374CD63E0F65832000D90B4A /* libshuffcommand.cpp */,
 536                                 3765B4790F77D15900C3EDC5 /* nocommands.h */,
 537                                 3765B4780F77D15900C3EDC5 /* nocommands.cpp */,
 538                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 539                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 540                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 541                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 542                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 543                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 544                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 545                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 546                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 547                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 548                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 549                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 550                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 551                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 552                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 553                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 554                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 555                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 556                                 37D928470F21331F001D4494 /* summarycommand.h */,
 557                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 558                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 559                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 560                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 561                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 562                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 563                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 564                         );
 565                         name = commands;
 566                         sourceTree = "<group>";
 567                 };
 568                 37D928AC0F213420001D4494 /* containers */ = {
 569                         isa = PBXGroup;
 570                         children = (
 571                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 572                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 573                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 574                                 3782163B0F616079008E1F6D /* fullmatrix.h */,
 575                                 3782163C0F616079008E1F6D /* fullmatrix.cpp */,
 576                                 37D927E20F21331F001D4494 /* groupmap.h */,
 577                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 578                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 579                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 580                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 581                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 582                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 583                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 584                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 585                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 586                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 587                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 588                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 589                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 590                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 591                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 592                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 593                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 594                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 595                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 596                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 597                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 598                                 379293C10F2DE73400B9034A /* treemap.h */,
 599                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 600                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 601                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 602                         );
 603                         name = containers;
 604                         sourceTree = "<group>";
 605                 };
 606                 37D928B10F213472001D4494 /* errorcheckor */ = {
 607                         isa = PBXGroup;
 608                         children = (
 609                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 610                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 611                                 37D928500F21331F001D4494 /* validcalculator.h */,
 612                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 613                                 37D928520F21331F001D4494 /* validcommands.h */,
 614                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 615                                 37D928540F21331F001D4494 /* validparameter.h */,
 616                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 617                         );
 618                         name = errorcheckor;
 619                         sourceTree = "<group>";
 620                 };
 621                 C6859E8C029090F304C91782 /* Documentation */ = {
 622                         isa = PBXGroup;
 623                         children = (
 624                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 625                         );
 626                         name = Documentation;
 627                         sourceTree = "<group>";
 628                 };
 629 /* End PBXGroup section */
 630
 631 /* Begin PBXNativeTarget section */
 632                 8DD76F620486A84900D96B5E /* mothur */ = {
 633                         isa = PBXNativeTarget;
 634                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 635                         buildPhases = (
 636                                 8DD76F640486A84900D96B5E /* Sources */,
 637                                 8DD76F660486A84900D96B5E /* Frameworks */,
 638                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 639                         );
 640                         buildRules = (
 641                         );
 642                         dependencies = (
 643                         );
 644                         name = mothur;
 645                         productInstallPath = "$(HOME)/bin";
 646                         productName = Mothur;
 647                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 648                         productType = "com.apple.product-type.tool";
 649                 };
 650 /* End PBXNativeTarget section */
 651
 652 /* Begin PBXProject section */
 653                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 654                         isa = PBXProject;
 655                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 656                         compatibilityVersion = "Xcode 3.0";
 657                         hasScannedForEncodings = 1;
 658                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 659                         projectDirPath = "";
 660                         projectRoot = "";
 661                         targets = (
 662                                 8DD76F620486A84900D96B5E /* mothur */,
 663                         );
 664                 };
 665 /* End PBXProject section */
 666
 667 /* Begin PBXSourcesBuildPhase section */
 668                 8DD76F640486A84900D96B5E /* Sources */ = {
 669                         isa = PBXSourcesBuildPhase;
 670                         buildActionMask = 2147483647;
 671                         files = (
 672                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
 673                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
 674                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
 675                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
 676                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 677                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 678                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 679                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 680                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 681                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 682                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
 683                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
 684                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 685                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 686                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
 687                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
 688                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
 689                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
 690                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
 691                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
 692                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
 693                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 694                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
 695                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
 696                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
 697                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
 698                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
 699                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
 700                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
 701                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
 702                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
 703                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
 704                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
 705                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
 706                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
 707                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
 708                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
 709                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
 710                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
 711                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
 712                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
 713                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
 714                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
 715                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
 716                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
 717                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
 718                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
 719                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
 720                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
 721                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
 722                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
 723                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
 724                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
 725                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
 726                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
 727                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
 728                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
 729                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
 730                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
 731                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
 732                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
 733                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
 734                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
 735                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
 736                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
 737                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
 738                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
 739                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
 740                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
 741                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
 742                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
 743                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
 744                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
 745                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
 746                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
 747                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
 748                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
 749                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
 750                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
 751                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
 752                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
 753                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
 754                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
 755                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
 756                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
 757                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
 758                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
 759                                 3782163D0F616079008E1F6D /* fullmatrix.cpp in Sources */,
 760                                 374CD63F0F65832000D90B4A /* libshuffcommand.cpp in Sources */,
 761                                 374CD6F10F65A4C100D90B4A /* coverage.cpp in Sources */,
 762                                 3765B47A0F77D15900C3EDC5 /* nocommands.cpp in Sources */,
 763                                 3765B4E20F78055000C3EDC5 /* sharedochiai.cpp in Sources */,
 764                                 3765B5160F780A7F00C3EDC5 /* sharedanderberg.cpp in Sources */,
 765                                 217595330F791EEE001CC3C6 /* sharedkulczynski.cpp in Sources */,
 766                                 2175953F0F792111001CC3C6 /* sharedkulczynskicody.cpp in Sources */,
 767                                 217595590F792490001CC3C6 /* sharedlennon.cpp in Sources */,
 768                                 217595640F7927BB001CC3C6 /* sharedmorisitahorn.cpp in Sources */,
 769                                 217595710F792A33001CC3C6 /* sharedbraycurtis.cpp in Sources */,
 770                                 3765B5380F7A5A9E00C3EDC5 /* heatmapcommand.cpp in Sources */,
 771                                 3765B5460F7A62A000C3EDC5 /* heatmap.cpp in Sources */,
 772                         );
 773                         runOnlyForDeploymentPostprocessing = 0;
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