Mothur.xcodeproj/project.pbxproj

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 317                                 37D927C20F21331F001D4494 /* cluster.hpp */,
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 328                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
 329                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
 330                                 37D927D40F21331F001D4494 /* database.hpp */,
 331                                 37D927D30F21331F001D4494 /* database.cpp */,
 332                                 37D927D60F21331F001D4494 /* display.h */,
 333                                 37D927D80F21331F001D4494 /* engine.hpp */,
 334                                 37D927D70F21331F001D4494 /* engine.cpp */,
 335                                 37D928B10F213472001D4494 /* errorcheckor */,
 336                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
 337                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
 338                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
 339                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
 340                                 37D927E60F21331F001D4494 /* inputdata.h */,
 341                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
 342                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
 343                                 37D927E90F21331F001D4494 /* kmer.cpp */,
 344                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
 345                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
 346                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
 347                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
 348                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
 349                                 37D927F60F21331F001D4494 /* observable.h */,
 350                                 37D927FC0F21331F001D4494 /* progress.hpp */,
 351                                 37D927FB0F21331F001D4494 /* progress.cpp */,
 352                                 37D928040F21331F001D4494 /* raredisplay.h */,
 353                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
 354                                 37D928060F21331F001D4494 /* rarefact.h */,
 355                                 37D928050F21331F001D4494 /* rarefact.cpp */,
 356                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
 357                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
 358                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
 359                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
 360                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
 361                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
 362                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
 363                                 37D928210F21331F001D4494 /* shared.h */,
 364                                 37D928200F21331F001D4494 /* shared.cpp */,
 365                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
 366                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
 367                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
 368                                 37D928480F21331F001D4494 /* summarydata.h */,
 369                                 37D928490F21331F001D4494 /* summarydisplay.h */,
 370                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
 371                         );
 372                         name = Source;
 373                         sourceTree = "<group>";
 374                 };
 375                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
 376                         isa = PBXGroup;
 377                         children = (
 378                                 8DD76F6C0486A84900D96B5E /* mothur */,
 379                         );
 380                         name = Products;
 381                         sourceTree = "<group>";
 382                 };
 383                 37D928A60F2133C0001D4494 /* calculators */ = {
 384                         isa = PBXGroup;
 385                         children = (
 386                                 37D927BE0F21331F001D4494 /* calculator.h */,
 387                                 3792948D0F2E271100B9034A /* treecalculator.h */,
 388                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
 389                                 37D927B90F21331F001D4494 /* ace.h */,
 390                                 37D927B80F21331F001D4494 /* ace.cpp */,
 391                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
 392                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
 393                                 37D927C00F21331F001D4494 /* chao1.h */,
 394                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
 395                                 37D927E80F21331F001D4494 /* jackknife.h */,
 396                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
 397                                 37D927F50F21331F001D4494 /* npshannon.h */,
 398                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
 399                                 379294880F2E258500B9034A /* parsimony.h */,
 400                                 379294890F2E258500B9034A /* parsimony.cpp */,
 401                                 37D928020F21331F001D4494 /* rarecalc.h */,
 402                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
 403                                 37D9281F0F21331F001D4494 /* shannon.h */,
 404                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
 405                                 37D928230F21331F001D4494 /* sharedace.h */,
 406                                 37D928220F21331F001D4494 /* sharedace.cpp */,
 407                                 37D928250F21331F001D4494 /* sharedchao1.h */,
 408                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
 409                                 37D928290F21331F001D4494 /* sharedjabund.h */,
 410                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
 411                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
 412                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
 413                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
 414                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
 415                                 37D928350F21331F001D4494 /* sharedsobs.h */,
 416                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
 417                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
 418                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
 419                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
 420                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
 421                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
 422                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
 423                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
 424                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
 425                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
 426                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
 427                                 37D928410F21331F001D4494 /* simpson.h */,
 428                                 37D928400F21331F001D4494 /* simpson.cpp */,
 429                                 37D928430F21331F001D4494 /* sobs.h */,
 430                                 374610810F40652400460C57 /* unweighted.h */,
 431                                 374610820F40652400460C57 /* unweighted.cpp */,
 432                                 37D9284E0F21331F001D4494 /* uvest.h */,
 433                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
 434                                 3746107C0F4064D100460C57 /* weighted.h */,
 435                                 3746107D0F4064D100460C57 /* weighted.cpp */,
 436                         );
 437                         name = calculators;
 438                         sourceTree = "<group>";
 439                 };
 440                 37D928A90F2133E5001D4494 /* commands */ = {
 441                         isa = PBXGroup;
 442                         children = (
 443                                 37D927CD0F21331F001D4494 /* command.hpp */,
 444                                 37D927C40F21331F001D4494 /* clustercommand.h */,
 445                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
 446                                 37D927C80F21331F001D4494 /* collectcommand.h */,
 447                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
 448                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
 449                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
 450                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
 451                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
 452                                 37D927E40F21331F001D4494 /* helpcommand.h */,
 453                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
 454                                 37D927F20F21331F001D4494 /* nocommand.cpp */,
 455                                 37D927F30F21331F001D4494 /* nocommand.h */,
 456                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
 457                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
 458                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
 459                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
 460                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
 461                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
 462                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
 463                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
 464                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
 465                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
 466                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
 467                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
 468                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
 469                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
 470                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
 471                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
 472                                 37D928270F21331F001D4494 /* sharedcommand.h */,
 473                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
 474                                 37D928470F21331F001D4494 /* summarycommand.h */,
 475                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
 476                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
 477                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
 478                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
 479                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
 480                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
 481                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
 482                         );
 483                         name = commands;
 484                         sourceTree = "<group>";
 485                 };
 486                 37D928AC0F213420001D4494 /* containers */ = {
 487                         isa = PBXGroup;
 488                         children = (
 489                                 37D927D50F21331F001D4494 /* datavector.hpp */,
 490                                 37D927DC0F21331F001D4494 /* fastamap.h */,
 491                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
 492                                 37D927E20F21331F001D4494 /* groupmap.h */,
 493                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
 494                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
 495                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
 496                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
 497                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
 498                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
 499                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
 500                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
 501                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
 502                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
 503                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
 504                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
 505                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
 506                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
 507                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
 508                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
 509                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
 510                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
 511                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
 512                                 379293C10F2DE73400B9034A /* treemap.h */,
 513                                 379293C20F2DE73400B9034A /* treemap.cpp */,
 514                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
 515                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
 516                         );
 517                         name = containers;
 518                         sourceTree = "<group>";
 519                 };
 520                 37D928B10F213472001D4494 /* errorcheckor */ = {
 521                         isa = PBXGroup;
 522                         children = (
 523                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
 524                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
 525                                 37D928500F21331F001D4494 /* validcalculator.h */,
 526                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
 527                                 37D928520F21331F001D4494 /* validcommands.h */,
 528                                 37D928510F21331F001D4494 /* validcommands.cpp */,
 529                                 37D928540F21331F001D4494 /* validparameter.h */,
 530                                 37D928530F21331F001D4494 /* validparameter.cpp */,
 531                         );
 532                         name = errorcheckor;
 533                         sourceTree = "<group>";
 534                 };
 535                 C6859E8C029090F304C91782 /* Documentation */ = {
 536                         isa = PBXGroup;
 537                         children = (
 538                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
 539                         );
 540                         name = Documentation;
 541                         sourceTree = "<group>";
 542                 };
 543 /* End PBXGroup section */
 544
 545 /* Begin PBXNativeTarget section */
 546                 8DD76F620486A84900D96B5E /* mothur */ = {
 547                         isa = PBXNativeTarget;
 548                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
 549                         buildPhases = (
 550                                 8DD76F640486A84900D96B5E /* Sources */,
 551                                 8DD76F660486A84900D96B5E /* Frameworks */,
 552                                 8DD76F690486A84900D96B5E /* CopyFiles */,
 553                         );
 554                         buildRules = (
 555                         );
 556                         dependencies = (
 557                         );
 558                         name = mothur;
 559                         productInstallPath = "$(HOME)/bin";
 560                         productName = Mothur;
 561                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
 562                         productType = "com.apple.product-type.tool";
 563                 };
 564 /* End PBXNativeTarget section */
 565
 566 /* Begin PBXProject section */
 567                 08FB7793FE84155DC02AAC07 /* Project object */ = {
 568                         isa = PBXProject;
 569                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
 570                         compatibilityVersion = "Xcode 3.0";
 571                         hasScannedForEncodings = 1;
 572                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
 573                         projectDirPath = "";
 574                         projectRoot = "";
 575                         targets = (
 576                                 8DD76F620486A84900D96B5E /* mothur */,
 577                         );
 578                 };
 579 /* End PBXProject section */
 580
 581 /* Begin PBXSourcesBuildPhase section */
 582                 8DD76F640486A84900D96B5E /* Sources */ = {
 583                         isa = PBXSourcesBuildPhase;
 584                         buildActionMask = 2147483647;
 585                         files = (
 586                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
 587                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
 588                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
 589                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
 590                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
 591                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
 592                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
 593                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
 594                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
 595                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
 596                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
 597                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
 598                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
 599                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
 600                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
 601                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
 602                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
 603                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
 604                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
 605                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
 606                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
 607                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
 608                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
 609                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
 610                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
 611                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
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 619                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
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 633                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
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 635                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
 636                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
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 639                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
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 644                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
 645                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
 646                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
 647                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
 648                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
 649                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
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 653                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
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 660                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
 661                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
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 664                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
 665                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
 666                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
 667                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
 668                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
 669                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
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