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212                 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
213                 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
214                 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
215                 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
216                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
217                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
218                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
219                 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
220                 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
221                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
222                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
223                 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
224                 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
225                 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
226                 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
227                 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
228                 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
229                 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
230                 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
231                 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
232                 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
233                 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
234                 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
235                 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
236                 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
237                 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
238                 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
239                 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
240                 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
241                 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
242                 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
243                 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
244                 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
245                 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
246                 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
247                 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
248                 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
249                 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
250                 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
251                 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
252                 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
253                 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
254                 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
255                 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
256                 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
257                 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
258                 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
259                 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
260                 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
261                 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
262                 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
263                 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
264                 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
265                 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
266                 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
267                 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
268                 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
269                 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
270                 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
271                 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
272                 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
273                 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
274                 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
275                 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
276                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
277                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
278                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
279                 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
280                 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
281                 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
282                 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
283                 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
284                 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
285                 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
286                 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
287                 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
288                 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
289                 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
290                 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
291                 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
292                 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
293                 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
294                 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
295                 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
296                 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
297                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
298                 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
299                 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
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301                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
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367 /* End PBXFileReference section */
368
369 /* Begin PBXFrameworksBuildPhase section */
370                 8DD76F660486A84900D96B5E /* Frameworks */ = {
371                         isa = PBXFrameworksBuildPhase;
372                         buildActionMask = 2147483647;
373                         files = (
374                         );
375                         runOnlyForDeploymentPostprocessing = 0;
376                 };
377 /* End PBXFrameworksBuildPhase section */
378
379 /* Begin PBXGroup section */
380                 08FB7794FE84155DC02AAC07 /* Mothur */ = {
381                         isa = PBXGroup;
382                         children = (
383                                 08FB7795FE84155DC02AAC07 /* Source */,
384                                 C6859E8C029090F304C91782 /* Documentation */,
385                                 1AB674ADFE9D54B511CA2CBB /* Products */,
386                         );
387                         name = Mothur;
388                         sourceTree = "<group>";
389                 };
390                 08FB7795FE84155DC02AAC07 /* Source */ = {
391                         isa = PBXGroup;
392                         children = (
393                                 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
394                                 37D928A60F2133C0001D4494 /* calculators */,
395                                 37D927C20F21331F001D4494 /* cluster.hpp */,
396                                 37D927C10F21331F001D4494 /* cluster.cpp */,
397                                 37D928A90F2133E5001D4494 /* commands */,
398                                 37D927C60F21331F001D4494 /* collect.h */,
399                                 37D927C50F21331F001D4494 /* collect.cpp */,
400                                 37D927C90F21331F001D4494 /* collectdisplay.h */,
401                                 37D928AC0F213420001D4494 /* containers */,
402                                 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
403                                 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
404                                 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
405                                 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
406                                 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
407                                 37D927D20F21331F001D4494 /* completelinkage.cpp */,
408                                 37D927D40F21331F001D4494 /* database.hpp */,
409                                 37D927D30F21331F001D4494 /* database.cpp */,
410                                 37D927D60F21331F001D4494 /* display.h */,
411                                 37D927D80F21331F001D4494 /* engine.hpp */,
412                                 37D927D70F21331F001D4494 /* engine.cpp */,
413                                 37D928B10F213472001D4494 /* errorcheckor */,
414                                 37D927DE0F21331F001D4494 /* fileoutput.h */,
415                                 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
416                                 37D927E00F21331F001D4494 /* globaldata.hpp */,
417                                 37D927DF0F21331F001D4494 /* globaldata.cpp */,
418                                 375873ED0F7D646F0040F377 /* heatmap.h */,
419                                 375873EE0F7D646F0040F377 /* heatmap.cpp */,
420                                 37D927E60F21331F001D4494 /* inputdata.h */,
421                                 37D927E50F21331F001D4494 /* inputdata.cpp */,
422                                 37D927EA0F21331F001D4494 /* kmer.hpp */,
423                                 37D927E90F21331F001D4494 /* kmer.cpp */,
424                                 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
425                                 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
426                                 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
427                                 37D927EF0F21331F001D4494 /* mothur.cpp */,
428                                 37D927F10F21331F001D4494 /* nameassignment.hpp */,
429                                 37D927F00F21331F001D4494 /* nameassignment.cpp */,
430                                 37D927F60F21331F001D4494 /* observable.h */,
431                                 37D927FC0F21331F001D4494 /* progress.hpp */,
432                                 37D927FB0F21331F001D4494 /* progress.cpp */,
433                                 37D928040F21331F001D4494 /* raredisplay.h */,
434                                 37D928030F21331F001D4494 /* raredisplay.cpp */,
435                                 37D928060F21331F001D4494 /* rarefact.h */,
436                                 37D928050F21331F001D4494 /* rarefact.cpp */,
437                                 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
438                                 37D928130F21331F001D4494 /* readmatrix.hpp */,
439                                 37D928120F21331F001D4494 /* readmatrix.cpp */,
440                                 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
441                                 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
442                                 37D9281D0F21331F001D4494 /* sequence.hpp */,
443                                 37D9281C0F21331F001D4494 /* sequence.cpp */,
444                                 37D928210F21331F001D4494 /* shared.h */,
445                                 37D928200F21331F001D4494 /* shared.cpp */,
446                                 37D928420F21331F001D4494 /* singlelinkage.cpp */,
447                                 37D928450F21331F001D4494 /* sparsematrix.hpp */,
448                                 37D928440F21331F001D4494 /* sparsematrix.cpp */,
449                                 37D928480F21331F001D4494 /* summarydata.h */,
450                                 37D928490F21331F001D4494 /* summarydisplay.h */,
451                                 37D9284C0F21331F001D4494 /* utilities.hpp */,
452                                 37519AB30F810FAE00FED5E8 /* venn.h */,
453                                 37519AB40F810FAE00FED5E8 /* venn.cpp */,
454                         );
455                         name = Source;
456                         sourceTree = "<group>";
457                 };
458                 1AB674ADFE9D54B511CA2CBB /* Products */ = {
459                         isa = PBXGroup;
460                         children = (
461                                 8DD76F6C0486A84900D96B5E /* mothur */,
462                         );
463                         name = Products;
464                         sourceTree = "<group>";
465                 };
466                 37D928A60F2133C0001D4494 /* calculators */ = {
467                         isa = PBXGroup;
468                         children = (
469                                 37D927BE0F21331F001D4494 /* calculator.h */,
470                                 3792948D0F2E271100B9034A /* treecalculator.h */,
471                                 37D927BD0F21331F001D4494 /* calculator.cpp */,
472                                 37D927B90F21331F001D4494 /* ace.h */,
473                                 37D927B80F21331F001D4494 /* ace.cpp */,
474                                 EB1216860F619B83004A865F /* bergerparker.h */,
475                                 EB1216870F619B83004A865F /* bergerparker.cpp */,
476                                 37D927BC0F21331F001D4494 /* bootstrap.h */,
477                                 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
478                                 EB1216E30F61ACFB004A865F /* bstick.h */,
479                                 EB1216E40F61ACFB004A865F /* bstick.cpp */,
480                                 37D927C00F21331F001D4494 /* chao1.h */,
481                                 37D927BF0F21331F001D4494 /* chao1.cpp */,
482                                 375873E60F7D63E90040F377 /* coverage.h */,
483                                 375873E50F7D63E90040F377 /* coverage.cpp */,
484                                 EB9303F70F53517300E8EF26 /* geom.h */,
485                                 EB9303F80F53517300E8EF26 /* geom.cpp */,
486                                 EB9303E90F534D9400E8EF26 /* logsd.h */,
487                                 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
488                                 EB6E68170F5F1C780044E17B /* qstat.h */,
489                                 EB6E68180F5F1C780044E17B /* qstat.cpp */,
490                                 37D927E80F21331F001D4494 /* jackknife.h */,
491                                 37D927E70F21331F001D4494 /* jackknife.cpp */,
492                                 375873F90F7D64AB0040F377 /* nseqs.h */,
493                                 37D927F50F21331F001D4494 /* npshannon.h */,
494                                 37D927F40F21331F001D4494 /* npshannon.cpp */,
495                                 379294880F2E258500B9034A /* parsimony.h */,
496                                 379294890F2E258500B9034A /* parsimony.cpp */,
497                                 37D928020F21331F001D4494 /* rarecalc.h */,
498                                 37D928010F21331F001D4494 /* rarecalc.cpp */,
499                                 37D9281F0F21331F001D4494 /* shannon.h */,
500                                 37D9281E0F21331F001D4494 /* shannon.cpp */,
501                                 37D928230F21331F001D4494 /* sharedace.h */,
502                                 37D928220F21331F001D4494 /* sharedace.cpp */,
503                                 37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */,
504                                 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */,
505                                 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
506                                 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
507                                 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
508                                 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
509                                 37D928250F21331F001D4494 /* sharedchao1.h */,
510                                 37D928240F21331F001D4494 /* sharedchao1.cpp */,
511                                 37D928290F21331F001D4494 /* sharedjabund.h */,
512                                 37D928280F21331F001D4494 /* sharedjabund.cpp */,
513                                 37D9282B0F21331F001D4494 /* sharedjclass.h */,
514                                 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
515                                 37D9282D0F21331F001D4494 /* sharedjest.h */,
516                                 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
517                                 EB1217210F61C9AC004A865F /* sharedkstest.h */,
518                                 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
519                                 375874000F7D64EF0040F377 /* sharedkulczynski.h */,
520                                 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */,
521                                 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */,
522                                 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */,
523                                 375874010F7D64EF0040F377 /* sharedlennon.h */,
524                                 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */,
525                                 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */,
526                                 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */,
527                                 375874090F7D64FC0040F377 /* sharedochiai.h */,
528                                 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */,
529                                 3758740A0F7D64FC0040F377 /* sharednseqs.h */,
530                                 37D928350F21331F001D4494 /* sharedsobs.h */,
531                                 37D928340F21331F001D4494 /* sharedsobs.cpp */,
532                                 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
533                                 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
534                                 37D928370F21331F001D4494 /* sharedsorabund.h */,
535                                 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
536                                 37D928390F21331F001D4494 /* sharedsorclass.h */,
537                                 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
538                                 37D9283B0F21331F001D4494 /* sharedsorest.h */,
539                                 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
540                                 37D9283D0F21331F001D4494 /* sharedthetan.h */,
541                                 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
542                                 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
543                                 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
544                                 37D928410F21331F001D4494 /* simpson.h */,
545                                 37D928400F21331F001D4494 /* simpson.cpp */,
546                                 37D928430F21331F001D4494 /* sobs.h */,
547                                 374610810F40652400460C57 /* unweighted.h */,
548                                 374610820F40652400460C57 /* unweighted.cpp */,
549                                 37D9284E0F21331F001D4494 /* uvest.h */,
550                                 37D9284D0F21331F001D4494 /* uvest.cpp */,
551                                 3746107C0F4064D100460C57 /* weighted.h */,
552                                 3746107D0F4064D100460C57 /* weighted.cpp */,
553                         );
554                         name = calculators;
555                         sourceTree = "<group>";
556                 };
557                 37D928A90F2133E5001D4494 /* commands */ = {
558                         isa = PBXGroup;
559                         children = (
560                                 37D927CD0F21331F001D4494 /* command.hpp */,
561                                 37D927C40F21331F001D4494 /* clustercommand.h */,
562                                 37D927C30F21331F001D4494 /* clustercommand.cpp */,
563                                 37D927C80F21331F001D4494 /* collectcommand.h */,
564                                 37D927C70F21331F001D4494 /* collectcommand.cpp */,
565                                 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
566                                 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
567                                 37B28F660F27590100808A62 /* deconvolutecommand.h */,
568                                 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
569                                 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
570                                 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
571                                 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
572                                 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
573                                 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
574                                 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
575                                 375873F10F7D64800040F377 /* heatmapcommand.h */,
576                                 375873F00F7D64800040F377 /* heatmapcommand.cpp */,
577                                 37D927E40F21331F001D4494 /* helpcommand.h */,
578                                 37D927E30F21331F001D4494 /* helpcommand.cpp */,
579                                 375873F30F7D648F0040F377 /* libshuffcommand.cpp */,
580                                 375873F40F7D648F0040F377 /* libshuffcommand.h */,
581                                 375873F60F7D649C0040F377 /* nocommands.cpp */,
582                                 375873F70F7D649C0040F377 /* nocommands.h */,
583                                 37D927FA0F21331F001D4494 /* parselistcommand.h */,
584                                 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
585                                 3792946E0F2E191800B9034A /* parsimonycommand.h */,
586                                 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
587                                 37D927FE0F21331F001D4494 /* quitcommand.h */,
588                                 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
589                                 37D928080F21331F001D4494 /* rarefactcommand.h */,
590                                 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
591                                 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
592                                 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
593                                 372E12940F263D5A0095CF7E /* readdistcommand.h */,
594                                 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
595                                 372E126E0F26365B0095CF7E /* readotucommand.h */,
596                                 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
597                                 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
598                                 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
599                                 37D928270F21331F001D4494 /* sharedcommand.h */,
600                                 37D928260F21331F001D4494 /* sharedcommand.cpp */,
601                                 37D928470F21331F001D4494 /* summarycommand.h */,
602                                 37D928460F21331F001D4494 /* summarycommand.cpp */,
603                                 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
604                                 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
605                                 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
606                                 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
607                                 374610760F40645300460C57 /* unifracweightedcommand.h */,
608                                 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
609                                 37519A9F0F810D0200FED5E8 /* venncommand.h */,
610                                 37519AA00F810D0200FED5E8 /* venncommand.cpp */,
611                         );
612                         name = commands;
613                         sourceTree = "<group>";
614                 };
615                 37D928AC0F213420001D4494 /* containers */ = {
616                         isa = PBXGroup;
617                         children = (
618                                 37D927D50F21331F001D4494 /* datavector.hpp */,
619                                 37D927DC0F21331F001D4494 /* fastamap.h */,
620                                 37D927DB0F21331F001D4494 /* fastamap.cpp */,
621                                 375873EA0F7D64520040F377 /* fullmatrix.h */,
622                                 375873EB0F7D64520040F377 /* fullmatrix.cpp */,
623                                 37D927E20F21331F001D4494 /* groupmap.h */,
624                                 37D927E10F21331F001D4494 /* groupmap.cpp */,
625                                 37D927EE0F21331F001D4494 /* listvector.hpp */,
626                                 37D927ED0F21331F001D4494 /* listvector.cpp */,
627                                 37D927F80F21331F001D4494 /* ordervector.hpp */,
628                                 37D927F70F21331F001D4494 /* ordervector.cpp */,
629                                 37D928000F21331F001D4494 /* rabundvector.hpp */,
630                                 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
631                                 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
632                                 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
633                                 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
634                                 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
635                                 37D9282F0F21331F001D4494 /* sharedordervector.h */,
636                                 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
637                                 37D928310F21331F001D4494 /* sharedrabundvector.h */,
638                                 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
639                                 37D928330F21331F001D4494 /* sharedsabundvector.h */,
640                                 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
641                                 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
642                                 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
643                                 379293C10F2DE73400B9034A /* treemap.h */,
644                                 379293C20F2DE73400B9034A /* treemap.cpp */,
645                                 37E5F3E10F29FD4200F8D827 /* treenode.h */,
646                                 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
647                         );
648                         name = containers;
649                         sourceTree = "<group>";
650                 };
651                 37D928B10F213472001D4494 /* errorcheckor */ = {
652                         isa = PBXGroup;
653                         children = (
654                                 37D927DA0F21331F001D4494 /* errorchecking.h */,
655                                 37D927D90F21331F001D4494 /* errorchecking.cpp */,
656                                 37D928500F21331F001D4494 /* validcalculator.h */,
657                                 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
658                                 37D928520F21331F001D4494 /* validcommands.h */,
659                                 37D928510F21331F001D4494 /* validcommands.cpp */,
660                                 37D928540F21331F001D4494 /* validparameter.h */,
661                                 37D928530F21331F001D4494 /* validparameter.cpp */,
662                         );
663                         name = errorcheckor;
664                         sourceTree = "<group>";
665                 };
666                 C6859E8C029090F304C91782 /* Documentation */ = {
667                         isa = PBXGroup;
668                         children = (
669                                 C6859E8B029090EE04C91782 /* Mothur.1 */,
670                         );
671                         name = Documentation;
672                         sourceTree = "<group>";
673                 };
674 /* End PBXGroup section */
675
676 /* Begin PBXNativeTarget section */
677                 8DD76F620486A84900D96B5E /* mothur */ = {
678                         isa = PBXNativeTarget;
679                         buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
680                         buildPhases = (
681                                 8DD76F640486A84900D96B5E /* Sources */,
682                                 8DD76F660486A84900D96B5E /* Frameworks */,
683                                 8DD76F690486A84900D96B5E /* CopyFiles */,
684                         );
685                         buildRules = (
686                         );
687                         dependencies = (
688                         );
689                         name = mothur;
690                         productInstallPath = "$(HOME)/bin";
691                         productName = Mothur;
692                         productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
693                         productType = "com.apple.product-type.tool";
694                 };
695 /* End PBXNativeTarget section */
696
697 /* Begin PBXProject section */
698                 08FB7793FE84155DC02AAC07 /* Project object */ = {
699                         isa = PBXProject;
700                         buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
701                         compatibilityVersion = "Xcode 3.0";
702                         hasScannedForEncodings = 1;
703                         mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
704                         projectDirPath = "";
705                         projectRoot = "";
706                         targets = (
707                                 8DD76F620486A84900D96B5E /* mothur */,
708                         );
709                 };
710 /* End PBXProject section */
711
712 /* Begin PBXSourcesBuildPhase section */
713                 8DD76F640486A84900D96B5E /* Sources */ = {
714                         isa = PBXSourcesBuildPhase;
715                         buildActionMask = 2147483647;
716                         files = (
717                                 37D928550F21331F001D4494 /* ace.cpp in Sources */,
718                                 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
719                                 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
720                                 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
721                                 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
722                                 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
723                                 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
724                                 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
725                                 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
726                                 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
727                                 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
728                                 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
729                                 37D928620F21331F001D4494 /* database.cpp in Sources */,
730                                 37D928630F21331F001D4494 /* engine.cpp in Sources */,
731                                 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
732                                 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
733                                 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
734                                 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
735                                 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
736                                 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
737                                 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
738                                 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
739                                 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
740                                 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
741                                 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
742                                 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
743                                 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
744                                 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
745                                 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
746                                 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
747                                 37D928750F21331F001D4494 /* progress.cpp in Sources */,
748                                 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
749                                 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
750                                 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
751                                 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
752                                 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
753                                 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
754                                 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
755                                 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
756                                 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
757                                 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
758                                 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
759                                 37D928870F21331F001D4494 /* shared.cpp in Sources */,
760                                 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
761                                 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
762                                 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
763                                 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
764                                 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
765                                 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
766                                 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
767                                 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
768                                 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
769                                 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
770                                 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
771                                 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
772                                 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
773                                 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
774                                 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
775                                 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
776                                 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
777                                 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
778                                 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
779                                 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
780                                 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
781                                 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
782                                 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
783                                 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
784                                 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
785                                 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
786                                 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
787                                 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
788                                 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
789                                 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
790                                 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
791                                 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
792                                 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
793                                 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
794                                 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
795                                 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
796                                 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
797                                 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
798                                 374610830F40652400460C57 /* unweighted.cpp in Sources */,
799                                 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
800                                 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
801                                 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
802                                 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
803                                 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
804                                 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
805                                 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
806                                 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
807                                 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
808                                 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
809                                 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
810                                 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
811                                 375873E70F7D63E90040F377 /* coverage.cpp in Sources */,
812                                 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
813                                 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */,
814                                 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */,
815                                 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */,
816                                 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */,
817                                 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */,
818                                 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */,
819                                 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */,
820                                 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */,
821                                 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
822                                 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
823                                 37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */,
824                                 37519AA10F810D0200FED5E8 /* venncommand.cpp in Sources */,
825                                 37519AB50F810FAE00FED5E8 /* venn.cpp in Sources */,
826                         );
827                         runOnlyForDeploymentPostprocessing = 0;
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829 /* End PBXSourcesBuildPhase section */
830
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840                                 GCC_PREPROCESSOR_DEFINITIONS = (
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910 }