document loess and mva.plot.pair

diff --git a/man/loess_normalization.Rd b/man/loess_normalization.Rd
index 20a93cad8c03728814d650c6bb2728a3a2accdf7..b7e5c3d74c46417f1df0faa333bdc98bfe0a1c5f 100644 (file)
--- a/man/loess_normalization.Rd
+++ b/man/loess_normalization.Rd
@@ -5,8 +5,8 @@
 \title{loess_normalization}
 \usage{
 loess_normalization(expressions, iterations = 2, small.positive = 0.1,
-  sample.size = 200, num.cores = max(floor(detectCores()/2), 1),
-  normalization.method = "mean")
+  sample.size = 200, num.cores = max(floor(parallel::detectCores()/2), 1),
+  imputation.method = "mean", offset = 0)
 }
 \arguments{
 \item{expressions}{Gene expression values with probes in rows and samples in columns}
@@ -19,7 +19,7 @@ loess_normalization(expressions, iterations = 2, small.positive = 0.1,
 
 \item{num.cores}{Number of cores to use (Default: half of them)}
 
-\item{noramlization.method}{Normalization method (Default: mean).}
+\item{imputation.method}{Method to impute missing values. String of "mean" (missing values are the mean of the row) or "knn" (use impute.knn to impute missing values) (Default: "mean").}
 }
 \value{
 data.frame of normalized expression values

diff --git a/man/mva.plot.pair.Rd b/man/mva.plot.pair.Rd
index 3a47edc80ec826f379ed745d38ead68b9dca0b37..9ef6f1f5dcef8b63b7540d162e268cc17dc44423 100644 (file)
--- a/man/mva.plot.pair.Rd
+++ b/man/mva.plot.pair.Rd
@@ -4,7 +4,7 @@
 \alias{mva.plot.pair}
 \title{mva.plot.pair}
 \usage{
-mva.plot.pair(array, title = F, small.positive = 0.1)
+mva.plot.pair(array, title = FALSE, small.positive = 0.1)
 }
 \arguments{
 \item{array}{Array of data to plot}