Makefile

   1 #!/usr/bin/make -f
   2
   3 R=R
   4 ROPTS=-q --no-save --no-restore-data
   5
   6 all: imprinted_genes_information.txt
   7
   8 geneimprint_human.html:
   9         wget -O $@ "http://www.geneimprint.com/site/genes-by-species.Homo+sapiens"
  10
  11 geneimprint_mouse.html:
  12         wget -O $@ "http://www.geneimprint.com/site/genes-by-species.Mus+musculus"
  13
  14
  15 parent_of_origin.html:
  16         wget -O $@ "http://igc.otago.ac.nz/FMPro?-DB=Catalogue.fm&-error=Error.html&-Format=Record3.html&Genetype=maingene&-SortField=Species&custom=Species&-SortField=Chr&custom=Chromosome&-SortField=Location&-SortOrder=Ascending&-Max=all&-Find"
  17
  18
  19 geneimprint_human.txt: geneimprint_human.html parse_geneimprint.pl
  20         ./parse_geneimprint.pl $< > $@
  21
  22 geneimprint_mouse.txt: geneimprint_mouse.html parse_geneimprint.pl
  23         ./parse_geneimprint.pl $< > $@
  24
  25 parent_of_origin.txt: parent_of_origin.html parse_parent_of_origin.pl
  26         ./parse_parent_of_origin.pl $< > $@
  27
  28 parent_of_origin_mouse.txt: parent_of_origin.html parse_parent_of_origin.pl
  29         ./parse_parent_of_origin.pl --taxon Mouse $< > $@
  30
  31 imprinted_genes.txt: combine_imprinted_genes.R geneimprint_human.txt \
  32         parent_of_origin.txt gene_aliases.txt
  33         $(R) $(ROPTS) -f $< --args $(wordlist 2,$(words $^),$^) $@
  34
  35 imprinted_genes_information.txt: imprinted_genes.txt
  36         ~/projects/chaim/bin/gene_info < $< > $@
  37
  38 imprinted_genes_mouse.txt: combine_imprinted_genes.R geneimprint_mouse.txt \
  39         parent_of_origin_mouse.txt gene_aliases_mouse.txt
  40         $(R) $(ROPTS) -f $< --args $(wordlist 2,$(words $^),$^) $@